Deinococcus rubellus: N0D28_04630
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Entry
N0D28_04630 CDS
T08504
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
drb
Deinococcus rubellus
Pathway
drb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
drb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
N0D28_04630 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
drb03021
]
N0D28_04630 (rpoC)
03400 DNA repair and recombination proteins [BR:
drb03400
]
N0D28_04630 (rpoC)
Enzymes [BR:
drb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
N0D28_04630 (rpoC)
Transcription machinery [BR:
drb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
N0D28_04630 (rpoC)
DNA repair and recombination proteins [BR:
drb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
N0D28_04630 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RPOC_hybrid
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RnfC_N
Apocytochr_F_C
Rabaptin
Motif
Other DBs
NCBI-ProteinID:
UWX64951
LinkDB
All DBs
Position
complement(865877..870505)
Genome browser
AA seq
1542 aa
AA seq
DB search
MKDFSKVKIAIASPAKIREWSFGEVEKPETINYRTLKPEREGLFDERIFGPIKDYECACG
KYKRQRYEGKVCERCGVEVTSSKVRRYRMGHIDLATPAAHIWYVKDSPSKIGTLLDLTAA
QLEKVLYFSSYLVTDARNAQKDGRPLKRGELLSDDEYRELRNGRQETYTLQGGIDAAIRD
GEYVTRGQTLGGNVVAKMDGLAQYRFPRRAEIAYSEVAEAALPVSSDMLVEQETFRAGEI
LGELEAAVEIKAPISATAFLLDLGEDSVMVELRESADADASSDDEGGEAEAETIKPGAVL
SRVYIPQGMDVLVAHGEIVEAGAVLARAEAGARLRVSRDSKLSAVSLPKKGDAKVTVHWT
RTAEYPVNPTMHVLVGDGSPVKKGQKVVGAIDKEEEIIAQADGVITLHAPASIIVSKAKV
YTYTDEPLVVNLDRVEPGDELADSGNLKSEISGRIEIDLVRKQVRVIESYDFDAKMGAEA
VKELLDDLDLPTLEAELGEMMKDNSRHKRAKARKRLEVTRSFISSGNHPSWMIMATVPVM
PPDLRPMVQVDGGRFATSDLNDLYRRLINRNNRLKKLMGQGAPDMIIRNEKRMLQEAVDA
LIDNGRRGSPVTNPGSDRALRSLTDLLGGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLH
QCGVPKRMALELFKPFLFKVLEEKGEVTNIKQARKMLERYRDTRDSVWDALEEVIEDKVV
LLNRAPTLHRLGIQAFEPILVEGQSIQLHPLVCEAFNADFDGDQMAIHVPLSAQAQAEAR
IQMLSSHNLLSPANGEPNVKPSRDIILGIFTLTQLRKDNLGMGTAFTGEQDVLDALESGK
VALNSHVTLNGAPITPGLIKYQFSSPDEAILAVERGGIDYQDHVRIQLNGVLYDTSAGRV
MFRRIVQEALGTQGHLIDQLVNLQTAYEKDSLRDMIMTCFKELGVEATAKLLDALKDSGF
KLSTTSGITIGIDDIVIPPAKDAILADADLKLREIEQNYEFGFMTEEERYKQVVTLWNDT
TDEVKNEVFKNFEANYPFNPLWIMSQSGARGNPQQIRQLAGMRGLMARPDGSTIEVPIKA
SFREGLTVLEYFISTHGARKGGADTALRTADSGYLTRKLVDVAHEVVVRDVDCGSTDYTH
IPLGHVDERSGEWRARKASEIETSIYGRTLTADVDVDGTVIPEGHMLSLEDVKLITKNAK
AVNEVYVRTPLNCKVKAGVCQKCYGYDLSQAKPVSMGEAVGVVAAESIGEPGTQLTMRTF
HTGGVAGSGDITMGLPRVIELFEGRKPKSQAVVADRDGIIRIEEEDERYLIRIDADDEQY
SSKTATKIGKALRMIVKDGDRVEAGQPITRGAINPHDLLMYKDTDAAQRYLVEEVQRVYR
SQGVKVHDKHIEVIVRQMLRYVEIVDGGDTTLLEGQTVERWEVDLANAALAEDKVQSSWK
PVLLGITKSSLTTKSWLSAASFQHTTHVLTEASMKGQVDELIGLKENVILGKLIPAGTGL
DIVRNMQVADPRTLEKYGEDVEPVSSPRPESFNYPVQPGASD
NT seq
4629 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagatttcagcaaagtcaagattgccatcgccagccccgcgaagattcgcgagtgg
agcttcggcgaggtcgaaaaacccgaaaccatcaactaccgcaccctcaagcccgagcgc
gaggggctgttcgacgagcgtatcttcgggccgatcaaggactacgagtgcgcctgcggc
aagtacaagcgccagcgttacgagggcaaggtctgcgagcgctgtggggtggaagtcacc
agcagcaaggtgcggcgctaccggatgggtcacattgacctggcgacgcctgccgcgcac
atctggtacgtcaaggacagccccagcaagatcggcacattgcttgatctgacggcagcg
caactcgaaaaagtgctgtacttctccagctatctggtcaccgatgcccgcaacgcccag
aaagatggccgccccctcaagcgcggcgaactgctgagtgacgacgagtaccgcgagctt
cgcaatggccgtcaggaaacctacaccctccagggcggcatcgacgcggccatccgtgac
ggcgagtacgtaacgcgcggtcagacgctgggcggcaacgtggtcgccaagatggatggc
ctggcccagtaccgcttcccgcgccgcgccgagatcgcctactcggaagtggccgaagcg
gccctgccggtttccagcgacatgctggtcgagcaggagaccttccgggccggtgagatt
ctgggagaactggaagccgccgtggagatcaaggccccgatcagcgccaccgccttcctg
ctcgatctgggcgaggactcggtgatggtggaactgcgcgagagtgcagacgcagacgcc
agcagcgacgacgaaggtggcgaggcggaagccgaaaccatcaagcccggcgcggtgctg
tcgcgcgtttacatcccgcagggcatggacgtgctggtggcccacggcgagatcgtcgag
gccggagccgtgctggcccgcgccgaggcaggtgcacggctgcgcgtcagccgcgacagc
aagctcagcgccgtgtcgctgcccaagaagggcgacgccaaggtcacggtccactggacc
cgcaccgccgagtacccggtcaaccccaccatgcacgtgctggtcggcgacggcagcccg
gtcaagaagggacagaaagtcgtcggcgcgattgacaaggaagaggagatcatcgcccag
gccgacggcgtgatcaccctgcacgccccggccagcatcatcgtcagcaaggccaaggtg
tacacctacaccgacgagccgctggtggtcaacctggaccgcgtggaacccggcgacgaa
ctggccgactccggcaacctcaagagcgagatttccgggcgcatcgaaattgacctggtg
cgcaagcaggtccgcgtgatcgagtcctacgatttcgacgccaagatgggcgcggaagcg
gtcaaggaactgctcgacgacctcgacttgcccacgctggaagccgaactcggcgagatg
atgaaggacaacagccgccacaagcgtgccaaggcccgcaaacgtctggaagtgacccgc
agctttatttccagcggcaaccatccctcctggatgatcatggccactgtgccggtgatg
ccgcccgatctgcgcccgatggtgcaggtggacggcggacgcttcgccacctccgacctc
aacgatctctaccgccgcctgatcaaccgcaacaaccgcctcaagaagctgatgggccag
ggcgctcccgacatgatcatccgcaacgaaaagcggatgcttcaggaagccgtggacgcc
ttgatcgacaacggacggcgcggcagccccgtgaccaaccccggctcggatcgtgctttg
cgttcgctgaccgacctgctcggcggcaaacagggccgttttcgccagaacctgctgggc
aagcgcgtggactactcgggccgctcggtcatcgtggtcggcccgcagctcaagctgcac
cagtgcggtgtgcccaagcgcatggcgctcgaactcttcaagcccttcttgttcaaggtg
ctagaagagaagggtgaggtcaccaacatcaagcaggcccgcaagatgctggagcgctac
cgcgacacccgcgatagcgtctgggacgccctggaagaagtgattgaggataaggtcgtg
ctgctcaaccgcgccccgacactccacagattgggcattcaggcgtttgagccgattttg
gtggaaggccagtccattcagcttcacccgctggtctgtgaggcgttcaacgccgacttc
gacggcgaccagatggcgattcacgtcccgctgtcggcccaggctcaagctgaggcccgc
attcagatgctctcgtcgcacaacctgctctcacccgccaacggtgagccgaacgtcaag
cccagccgcgacatcattctcggcatcttcaccctgacccagctccgcaaggacaacctc
ggcatgggcacggcctttaccggcgagcaggacgtgctggacgcactggaaagcggcaag
gtggccctcaacagccacgtgaccctcaacggcgcacccatcacacccggcctgatcaag
taccagttctccagccccgacgaagcgattctggccgttgagcgcggcggcatcgattat
caggaccacgtgcggattcagctcaatggcgtcctgtacgacacctccgccgggcgcgtg
atgttccgccggatcgtacaggaagcgctcggaacgcagggccacctgatcgatcagctg
gtcaacctccagaccgcctacgagaaagactcgctgcgcgacatgatcatgacctgcttc
aaggagcttggggtggaagccaccgccaaactgctcgacgccctcaaggacagcggcttc
aagctctccaccacctcgggcatcaccatcggcatcgacgacatcgtgattccgcctgcc
aaggacgccatcctggccgacgccgatctcaagctgagggaaatcgagcagaactacgag
ttcggcttcatgaccgaggaagagcgctacaagcaggtcgtgacgctctggaacgacacc
accgacgaggtcaagaacgaggtcttcaaaaacttcgaggccaactacccgttcaacccg
ctgtggatcatgtcgcagtcgggtgcccgtggcaacccgcagcagattcgccagctggcc
ggaatgcgcgggttgatggcccgccccgacggcagcaccatcgaggtgccgatcaaggcc
agcttccgcgagggcctgaccgtgctggagtacttcatcagcacccacggcgcgcgtaag
ggcggcgcggacacagcactcagaaccgccgactccggctacctgacccgcaagctggtt
gacgtggcccacgaagtcgtggtgcgcgacgtggactgcggaagcaccgattacacccac
attccgctgggccatgtggatgagcgcagcggcgagtggcgtgcccgtaaggccagcgag
atcgagaccagcatctacggccgcaccctgacggcggacgtggacgtggacggcacggtc
attcccgaaggccacatgctcagcctggaagacgtcaagctgatcaccaagaatgccaag
gccgtgaatgaggtctacgtccgcacgccgctcaactgcaaggtcaaggcgggcgtgtgc
cagaagtgctacggctacgatctctcgcaggccaagccggtcagtatgggcgaggcggtg
ggcgtggtcgcggcggaaagtatcggtgaacccggtacccagctcaccatgcgcaccttc
cacaccggcggcgtggcgggcagcggggacatcaccatgggtctgccgcgcgtgatcgag
ctgttcgagggccgcaagcccaagtcgcaggcggtggtcgctgaccgtgacggcatcatc
cgcatcgaagaggaagatgagcgctacctgattcgcatcgacgccgacgacgagcagtac
agctccaagaccgccaccaagatcggcaaggcgctgcgcatgatcgtcaaggacggcgac
cgggtggaagccgggcagccgatcacgcgcggcgcgatcaacccccacgacctgctgatg
tacaaggacaccgacgccgcccagcgctacctggtggaagaagtgcagcgcgtctaccgc
tcgcagggcgtgaaggttcacgacaagcacatcgaagtcatcgttcgccagatgctgcgc
tacgtcgagattgtggacggcggcgacaccaccctgctcgaaggccagaccgtcgagcgc
tgggaagtcgatctggccaacgcggccctcgccgaagacaaggttcaaagctcctggaag
cccgttctgctgggcatcaccaagagcagcctgaccaccaagtcctggctgtcggcggcc
agcttccagcacaccacccacgtgctgaccgaggccagcatgaagggccaggtagacgag
ctgatcggcctcaaggaaaatgtcattctcggcaagctgattccggcgggcacgggtctg
gacatcgtccgcaacatgcaggtggccgacccccgcacgctggagaagtacggcgaggac
gtggagccggtgtcgtctccgcgccccgagtcgttcaactatccggtgcagccgggagcc
agcgactga
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integrated database retrieval system
