Deinococcus rubellus: N0D28_09650
Help
Entry
N0D28_09650 CDS
T08504
Name
(GenBank) DEAD/DEAH box helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
drb
Deinococcus rubellus
Pathway
drb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
drb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
N0D28_09650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
drb03400
]
N0D28_09650
Enzymes [BR:
drb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
N0D28_09650
DNA repair and recombination proteins [BR:
drb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
N0D28_09650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CarD_TRCF_RID
TRCF
ResIII
UvrB_inter
Cas3-like_C_2
AAA_16
Motif
Other DBs
NCBI-ProteinID:
UWX63026
LinkDB
All DBs
Position
1871529..1874675
Genome browser
AA seq
1048 aa
AA seq
DB search
MTVAVPSLSKLLPGVPPGNVLLLPQVARAALFAAHAGPCVLLTTPDRLPLYQGAGQLGAP
ISVNPGLREWDEKREHVVMDIRTAMDLFPARPEDHALTFTVGRQYPREEVLSRLEHLGYP
RLIDGRLDELGFILRGDTLDLYLTADPQEGQLAALRAEFFGDELDTLRELSADGLPGGKL
ERYAVAPTEGYLSETKWDATRLELLPGRVFLDAPEFYASVLGPVTDLLWAQLLMREVTSF
GRAPLILEDFTLDLVTLPYYRARLGELATDVDGWRAAGYRVLLLVRHDRTATYLAEKLLG
NTVLDKTGPKWLNLPRLDAGELGFLRSSGEGGFVLEQARMVVLTEDLIYGFQGGSALRGK
KLSGKPVTDALGLAVGDYLIHPEHGIGQFQGLQTRTVLGVTRDYLNISYKNEAALAVPIE
LLPTLRRHPGTTDDPPALSSLDKNAWAKAKERAKKNAEEVAGKLLVQYAARQVTPGNSFP
ANQEWERQIADNFEFELTADQKTALKETLKDLEAPNPADRLISGDVGFGKTEVALRAAHR
VVGAGMQVAVLVPTTLLAEQHTSVFVERFKDLPVRVEGLSRFTGDKQAKAILMDLASGKV
DIIIGTHRLLSSDIVFKNLGLIIVDEEHRFGVSQKEKLRALRGMPEISKDGKIEIPEGVK
AVDTLALSATPIPRTLYMSMVGLRDMSSIQTPPKGRKPIQTILAPFDPVTVRDAIVSEIE
RGGKVFYIHDRIASIGARSLYLRNLVPEARIGVAHGRMNEEELEEIMLGFEEGAFDVLVS
TTIVETGLDIPEANTILIERADRLGLAQLYQLRGRVGRRSTDAYAYLFFPPRMTENASRR
LWAIADLQDLGSGHLLAEKDMEIRGVGNILGEEQHGHVQAVSIDVYTELLAEAVAKLKGE
PIKVPLSVSIDLPINARLDAEYFGHDEDARISTYGRLSEARTLQAISRVERDLRKKFGPP
SSEVQNFIDLAKLRLTALARRVLSIGETMTDLQITFAYKALDYDAGGLKKFPHKTEVTTF
PPSIKIQKRGIRVDDYARTLIDVLGYFG
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atgactgtcgccgtgccctcgctctccaaactgctgccgggtgtgccgccaggcaatgtg
ctgctgctcccgcaggtggcccgcgccgccttgttcgccgcccacgctggcccctgtgtg
ctgctgaccacgcccgaccgattgccactctaccagggcgcgggccagctcggcgcgccc
atcagtgtcaaccccggcctgcgcgaatgggacgagaagcgcgaacacgtcgtgatggac
attcggacggcgatggacctgtttccggcccggcccgaggaccacgccctcacctttacg
gtgggccgccagtacccgcgtgaagaggtgctctcgcggctcgaacacctcggctaccca
cgcctgatcgacgggcggctcgacgaactgggctttatcctgcgcggcgacacgctcgat
ctgtacctgacggcggacccccaggaaggtcagctcgccgcactgagggctgagttcttc
ggcgacgaactcgacaccctgcgtgaactgagcgctgacggattgcccggtggcaagctg
gagcgttacgccgttgcccccaccgaaggctacctgagcgaaaccaaatgggacgccacc
cgcctggaactgctgccgggccgggtcttcctcgacgcccccgagttctacgcctcggtg
ctgggccccgttaccgacttgctgtgggcgcagcttctgatgcgtgaggtgaccagtttt
ggccgtgccccgctgatcctggaagacttcacgctcgatctggtgacgctaccgtattac
cgcgcccggctgggtgaactggcgacggacgtggacgggtggcgcgcggcgggctaccgg
gtgctgctgctggtccggcatgaccgcactgctacttatctggccgagaagctgctgggc
aacacggtgttggataaaacaggacccaaatggctgaatctgccgcgtctggacgcgggc
gagctgggcttcctgcgctccagcggcgagggcggcttcgtgctggagcaggcccgcatg
gtggtgctgaccgaggacctgatctacggctttcagggcggctcggcgctgcgcggcaag
aaactcagcggcaaacccgtcaccgacgcgctgggactggcggtgggcgactatctgatt
cacccggagcacggcatcggccagtttcaggggctgcaaacccgcacggtgctgggcgtc
acccgcgattacctcaatatcagctacaagaacgaggcggctctggccgtgccgattgag
ctgttgcccaccctgcgccgccaccccggtaccaccgacgacccgcccgccctgagtagc
ctcgacaagaatgcctgggccaaagccaaggagcgcgccaagaaaaatgctgaggaagtg
gcaggcaagctgctggtgcagtacgccgcccggcaggtcacgcccggcaacagttttccc
gccaaccaagagtgggagcgccagatcgcggataatttcgaatttgagctgacggctgat
cagaaaacggccctcaaggaaaccctcaaagacctcgaagcgcccaacccggcggaccgc
ctgatctccggcgacgtgggcttcggcaagacggaagtggccctgcgcgccgcccaccgg
gtcgtgggcgcgggcatgcaggtggccgttctcgtgccgaccaccctgctggccgagcag
cacacctcggttttcgtggagcgcttcaaggacctgccggtgcgggtcgaggggctgtcg
cgcttcaccggcgacaagcaggccaaggcaattctgatggatctggcgtcgggcaaggtg
gacatcatcatcggcacccaccgcctgctcagcagcgacatcgtgttcaagaatctgggc
ctgatcatcgtggacgaggagcaccgcttcggcgtgtcgcagaaggaaaagctgcgggcg
ctgcgcggcatgccggaaatcagcaaggacggcaagatcgagattcccgaaggggtcaag
gcggtggacacgctggcgctgtcggccaccccgattccgcgcaccctttacatgagcatg
gtcggtctgcgcgacatgtccagcatccagacaccgcccaagggccgcaaaccaattcag
accatcctggcccccttcgacccggtgacggtgcgtgacgccatcgtgtcggagatcgag
cgcggcggcaaggtcttctatatccatgaccgcatcgccagcatcggggcgcgtagtttg
tacctgcgcaatctggtgccggaagcccgcatcggcgtggcgcacgggcgcatgaacgag
gaagaactcgaggagatcatgctcggcttcgaggagggggccttcgacgtgctggtctcc
accaccatcgtcgaaaccggcctggacattcccgaggccaacaccatcctgatcgagagg
gccgaccgattggggctggcgcagctttaccagcttcggggacgggtcgggcggcgcagc
accgacgcctacgcctacctgttcttcccgccgcgcatgactgagaacgcctcccggcgg
ctgtgggccatcgccgacctgcaagacctgggcagcgggcacctgctggccgagaaggat
atggagattcgtggagtggggaacattctgggtgaggagcagcacgggcacgtgcaggcg
gtcagcattgacgtgtacaccgagctgctggccgaggcggtggccaagctcaagggcgag
ccgatcaaggtgccgctgagcgtcagcatcgacctccccattaatgcccgccttgacgcc
gagtacttcggccacgacgaggacgcccgcatcagcacctacgggcggctctcggaagcg
cgaaccttgcaggccatcagccgcgtcgagcgtgatttgcgcaagaagttcggccccccc
agcagtgaggtccagaacttcatcgacctcgccaagctgcggctcaccgccctggcccgc
cgggtgctgagcatcggcgagaccatgactgacctccagatcaccttcgcctataaagcg
ctcgactacgacgcgggcggcctcaagaagttcccgcacaagaccgaagtgaccaccttc
ccgccgtccatcaagattcagaagcgcggcatcagggtagacgactacgccaggacattg
attgacgtgctggggtatttcgggtag
DBGET
integrated database retrieval system
