Draconibacterium halophilum: G0Q07_03030
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Entry
G0Q07_03030 CDS
T06417
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
drc
Draconibacterium halophilum
Pathway
drc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
drc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G0Q07_03030 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
drc03019
]
G0Q07_03030 (rnr)
03016 Transfer RNA biogenesis [BR:
drc03016
]
G0Q07_03030 (rnr)
Enzymes [BR:
drc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
G0Q07_03030 (rnr)
Messenger RNA biogenesis [BR:
drc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
G0Q07_03030 (rnr)
Transfer RNA biogenesis [BR:
drc03016
]
Prokaryotic type
tRNA degradation factors
G0Q07_03030 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
OB_HELZ2
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QIA06766
UniProt:
A0A6C0R9X0
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All DBs
Position
complement(773123..775285)
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AA seq
720 aa
AA seq
DB search
MGRKKKNKLRKKKSSGTYNKKKLKNAILSTLYENPGNTVNYRKLAGSLSIKDPETRKLIN
VVLQELADDDYLDQISRGKFKLKARTGKVTGIIEMQPQGFAYVVSDELEQPVVISSRNQK
HAMEGDKVRIHVYARRKKHDLEGEVTEILERAKTIFVGKVQTTKNFAFLVPSGKVGFDIF
IPKEKLNGAKDGQKAIAEINDWPANARSPFGEIKEVLGDTGDNDAEMHAILAEFELPHKF
PKNVDKAAEKIPLEIPKEEIKKRRDMRKTTTFTIDPADAKDFDDALSLKKLSNGNWEVGV
HIADVTHYVRPNTIIEDEAQDRATSVYLVDRVVPMLPERLSNGVCSLRPNEDKLCFSAVF
ELTENAKIKKQWFGKTAIHSDRRFTYEEAQEIIETGKGDFSEAVLKLNELAIKLRDQRFN
SGSIAFERVEMKFDIDEAGKPVSVSFKESKESNHLIEEFMLLANKKVAEFIGKVPEKKTP
KTFVYRIHDKPDPDKLSSFNTFIKRFGHGIQLTTPRAISTSLNKLLTEVKGKNEQNVVET
LAIRTMAKAAYSTRNIGHYGLSFDYYTHFTSPIRRYPDMMVHRLLEKYLDGARSVNEQKY
EGLCKHSSEMEAKAAKAERSSIKYKQVEFMQDHIGKTYPGTISGVTDWGIYVELENKIEG
MIPIAQMDDDFYIFDEKNYALVGRHSQKSFQLGEKINVRVWRTNLERKQLDFRLAEQEKG
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgggaagaaagaaaaagaataaactgcgcaaaaagaaaagcagcggcacttacaacaag
aaaaagcttaaaaatgcaatactttcaacactttacgaaaaccccggcaacacagttaat
taccgcaaactagcagggtcattaagtatcaaagatccggagacacgtaaactaattaac
gttgtacttcaggagcttgccgacgatgattacctcgatcagatatcgcgcggaaaattt
aaactgaaagcgcgcaccggaaaagtaacgggtattattgaaatgcaaccacagggtttt
gcttacgttgtcagcgacgaactggagcagccggttgttatctcatcgcgcaaccagaaa
catgctatggaaggtgacaaggtgcgaattcatgtgtatgcacgccgcaaaaagcacgat
ttggaaggggaagtaaccgagattttggaacgggcaaaaacaatatttgtgggaaaggtg
caaactaccaagaattttgcatttttggttccgtccgggaaagttggtttcgatattttt
attccgaaagaaaaactaaacggtgcaaaagacgggcaaaaagccattgccgaaattaat
gactggccggcaaatgcacgcagtccgtttggagaaattaaagaagtgcttggcgacact
ggcgataacgatgccgaaatgcacgctattctggccgagtttgaactgccgcataaattc
ccgaaaaacgtagataaagcagccgaaaaaattccgctggagataccaaaagaagaaatt
aaaaagcggcgtgatatgcgcaaaaccaccacatttactatcgacccggctgatgcaaaa
gattttgatgatgcactttcgctaaaaaaactgagtaacggaaactgggaggttggtgtt
cacattgccgatgttacgcattatgtgcgcccaaatactattattgaggacgaggcgcag
gaccgtgcaacttctgtttatctggtcgaccgggttgttccgatgctccccgagcggctg
tcgaatggtgtttgttcgcttcggccaaacgaagataaattgtgtttctcggctgttttt
gaacttactgagaacgcaaaaataaaaaagcagtggtttggcaaaacagccattcattcc
gaccgacgctttacgtacgaagaagcacaggaaattattgaaaccggcaaaggtgatttt
tctgaagcagtgttaaaactcaatgagctggccataaaattgcgcgatcaacgttttaat
agcgggtcaatcgcttttgaacgcgttgaaatgaaatttgacattgacgaagccggcaaa
ccggtttctgtttcgtttaaagaatcgaaagaatcgaaccacctgattgaggaatttatg
ttgctagccaacaaaaaagtggccgagtttattggaaaagttccggagaaaaaaactccg
aaaacctttgtttaccgtattcacgacaaacccgaccccgacaagctttcctcattcaac
acctttatcaagcgctttggtcacggtattcagctcacaacaccgcgcgccatttcaact
tcgcttaacaaattactaaccgaagtaaaaggcaaaaatgaacagaatgttgtagaaaca
ctggcaatccgaacaatggcgaaagccgcgtattcaacccgcaatattgggcattacggt
ttgtcgtttgattattatactcactttacctcacccatcaggcgctatcccgatatgatg
gtgcatcgcctgctggaaaaatatttagacggagcgcgttcggttaacgaacaaaaatac
gagggactgtgcaagcactcgtctgaaatggaagccaaagcagccaaagccgagcggtca
tctataaaatacaaacaggttgaatttatgcaggatcatatcggtaaaacgtacccggga
accatttcgggagtaaccgactggggaatttatgttgagcttgaaaacaaaattgaaggc
atgataccaattgcccaaatggatgatgatttctatattttcgatgaaaaaaattatgcc
ctcgtggggcgccattcacaaaaaagttttcagcttggcgaaaagataaatgttcgggta
tggcgcaccaatcttgaaagaaaacaacttgactttaggcttgcagaacaagagaaaggg
tag
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