Diaphorobacter ruginosibacter: H9K76_12225
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Entry
H9K76_12225 CDS
T06813
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
drg
Diaphorobacter ruginosibacter
Brite
KEGG Orthology (KO) [BR:
drg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
drg03019
]
H9K76_12225 (hrpA)
Enzymes [BR:
drg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
H9K76_12225 (hrpA)
Messenger RNA biogenesis [BR:
drg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
H9K76_12225 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
WHD_HA2
AAA_22
AAA_19
AAA_23
NACHT
nSTAND3
T2SSE
nSTAND_NTPase5
AAA_25
SLFN-g3_helicase
PhoH
SRP54
Motif
Other DBs
NCBI-ProteinID:
QNN55436
UniProt:
A0A7G9RIL1
LinkDB
All DBs
Position
complement(2708808..2712881)
Genome browser
AA seq
1357 aa
AA seq
DB search
MPLQITFPESLPVSARREEIMEAMDRHQVIIVCGETGSGKTTQLPKIALALGRGKVNATP
DDKGNVRGHLIGHTQPRRIAASSVAKRIAEELNTPPGEVVGYKVRFQDTLHKGASVKLMT
DGILLAETQTDPLLKAYDTLIIDEAHERSLNIDFLLGYIKQILPKRPDLKVVVTSATIDA
DRFARHFAGKSGPAPVIMVSGRTYPVEMRYRPFEDKKDFDLNDAIAEGVDELWAGGKDGD
ILVFLPGEREIREAADHLRKHLQHSPVLRSAEVLPLFSRLSQAEQDRIFDGHTGRRIVLA
TNVAETSLTVPGIRYVIDSGTARVKRYSFRSKVEQLLVEPISQAAANQRAGRCGRVANGI
CIRLYDEAAFDARDRFTDPEILRSSLAGVILRMKSLGLGDVVHFPFLEAPSGRAIADGYQ
LLAELGAVDDQGQLLPMGKELSRLPLDPRVGRMILEARERGAVAEVLIIASALSVQDVRD
RPLEAQQQADQQHAKFDDEKSEFTGYLRLWKWLDDARGGKVVAKTRKEMVEQSAAPKALG
RNAAFLPVSQRSGGASAQAPAEERPAVYDPAEAQPASHKISNRQWEQLLRQNFINIRRVR
EWRDIHSQLLTVVKEQKWLVNQEAAGYEEVHKSMLSGLLGNVGYKAEESDSYLGAHGIKF
YPHPGAHLSKKPGRWIVAAEQVETSRLYGRGIAAIEPQWLEEIGAHLLKKQLLDPHWSKK
QADVVAYERATLYGLVVYNGRRVSYGRVDPQTARELFIRQAMVEGEWETHWQFLAANLKM
VRKVEELEHKSRRQDVLVDDELIYAFYDQQLPREVFSGATFDKWFRNAGKGNPDLLRLSR
DELMRHEAAGITTQAFPKTVKLGGVDCSAAYLHSPGDARDGITVTVPLFVLNQVSEDRAE
WLVPGMLKDKIQALLKSLPQRPRSRFVPLAENAQRLADLFLAPEKFGQGSLMDALLKQAR
DETSLDIKRADFKLDMLSPHLFMNFRITDEHGRQMGQGRNLGALKSELGAKARGAFQALA
SLRVAGNEAGGKADAVPGAAPGSVSAPAPSAVPSARAQKPEAPKAQAPHKPQQQADARYK
EWSFGELPELMEIGKGNQTLIGFPALIDHGEAVGLEVFDEPEIAAVKHRAGLRRLFALQI
RDALKYLEKNIPDLQKMAVAYMPLGTQEELREQIIDVAIDRAFLQDPLPTSEAAFKQRVQ
DGRGRLTLIANEVARMASGILAEYAAAQRKIKDTKNAADATADASAQLQRLMPKNFIAIA
PWAQLGHYARYLKAITIRLDKHRTDPARDGAKSGELKPLEQRYWRLVAERKGQVDARMQE
YRWMLEELRVSFFAQELRTPYPVSAKRMEKVWAQLQN
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atgcctttgcagatcacgttccccgagtcactccccgtatccgcccgccgtgaagaaatc
atggaggccatggatcgccaccaggtcatcatcgtctgcggcgagacgggctccggcaag
accacgcagttgcccaagattgcgctggcactcggccgtggcaaggtgaatgcgacgccg
gacgacaagggcaacgtgcgcggccatctcatcggccacacgcagccgcgccggatcgca
gcttcgtccgtggccaagcgcattgccgaggaactgaacacgcccccgggcgaggtggtc
ggctacaaggtgcgcttccaggacacgctgcacaagggggcatcggtcaagctgatgacg
gacggcatcctgctggccgagacgcagaccgacccgctgctcaaggcctacgacacgctg
atcatcgacgaggcgcacgagcgcagcctgaacatcgacttcctgctgggctacatcaag
cagatcctgccgaagcgccccgacctgaaggtggtggtgacctcggccaccatcgacgcg
gatcgctttgccaggcatttcgcaggaaagagcggtcccgcgccggtcatcatggtctcg
ggacgcacctaccccgtggagatgcgctaccgaccattcgaggacaagaaggacttcgac
ctcaacgacgcgatcgccgaaggcgtggacgagctctgggcaggaggcaaggatggggac
atcctggtgttcctgccgggcgagcgcgagatccgcgaggcagccgatcacctgcgcaag
cacctgcagcactcacccgtgctgcgcagcgccgaggtgcttccgctgttctcgcgcctg
tcgcaggccgagcaggaccgcatcttcgacggccacacgggccggcgcatcgtgctggcc
accaacgtcgcggaaacctcgctcaccgtgccgggcattcgctacgtgatcgactccggt
acggcgcgcgtgaagcggtattcgttccgcagcaaggtcgagcagttgctggtcgagccg
atcagccaggcggctgccaatcagcgtgcgggccgctgcggccgtgtggccaacggcatc
tgcatccgcctgtatgacgaggcggccttcgatgcgcgcgaccgcttcaccgatcccgaa
atcctgcgttcctcgcttgccggggtgatcttgcgcatgaagtcgctcgggctcggtgac
gtggtgcatttcccgttcctcgaggcgccttcgggccgggcgattgccgatgggtatcag
ctgctcgcggaattgggcgcggtggacgatcagggccagttgctgcccatgggcaaggag
ctctcgcgcctgccgctcgatccgcgcgtgggccgcatgattcttgaagcgcgcgagcgc
ggtgcggtcgccgaggtgctcatcatcgcgtcggccctgagcgtgcaggatgtgcgcgac
cggcccctggaagcgcagcagcaggccgaccagcagcatgccaagttcgatgacgagaag
agcgagttcaccggctatctgaggctgtggaaatggcttgacgatgcccgcggcggcaag
gtcgtggccaagacgcgcaaggaaatggtagagcagagtgcggcgccgaaggcactgggc
cgcaatgcggcattcctgccggtctcgcagcgcagcggcggtgcgagtgcacaggctccc
gccgaggaaaggccggcggtctacgatcccgccgaagcacagccggcaagccacaagatc
agcaaccgccagtgggaacagttgctgcgccagaatttcatcaacatccgccgcgtgcgc
gagtggcgcgacatccattcgcaactgctcaccgtggtgaaggagcagaagtggctcgtg
aaccaggaggcggcgggctacgaggaggtccacaagtcgatgctgtccggactgctgggc
aacgtcggctacaaggccgaggagagcgactcctatctgggcgcgcacggcatcaagttc
tacccgcacccgggcgcgcatctgtcgaagaaacccggtcgctggatcgtggcggccgag
caggtggaaacctcgcgcctctacggccgcggcattgccgcgatcgagccgcaatggctg
gaggagatcggcgcgcacctgctcaagaagcagttgctcgatccgcactggtccaagaag
caggccgacgtcgtggcctacgagcgggccacgctgtacgggcttgtcgtatacaacggt
cgccgcgtgagctacgggcgggtcgatcctcagaccgcgcgcgagctgttcatccgccag
gcgatggtggagggcgagtgggagacgcattggcagttccttgccgccaatctcaagatg
gtgcgcaaggtggaggagctcgaacataagagccgccgccaggacgtgctggtggatgac
gagctcatctatgcgttctacgatcagcagctccccagggaggtattcagcggcgcgacc
ttcgacaagtggttccgtaacgccggaaaaggcaaccccgacctgttgcgcctctcgcgc
gacgaactcatgcggcatgaggccgcgggtatcaccacgcaggcatttcccaagaccgtg
aagctcggcggcgtcgattgctcggctgcctatctgcacagcccgggtgatgcgcgcgat
ggcatcacggtgaccgtgccgctgttcgtgctcaaccaggtgagcgaggaccgcgccgag
tggctggttcccggcatgctcaaggacaagatacaggcactgctcaagagtctgccgcag
cgcccgcgcagccgctttgtgccgctggcggagaacgcgcaacgcctggcggacctgttc
ctggcacccgagaaattcggccagggcagcctgatggatgcgctgctgaagcaggcacgg
gacgaaacatcgctggacatcaagcgcgccgatttcaagctcgacatgctgagcccgcat
ctgttcatgaatttccgcatcacggacgaacacggccgccagatggggcaggggcgcaac
ctgggggcgctcaagtccgagctcggcgccaaggcacgcggcgcgttccaggcgctggct
tcgttgcgtgtagcgggtaatgaagcaggcgggaaggccgacgctgtgccaggcgccgcg
ccgggttccgtgtccgcgcctgctccttcagcggtaccctcggcgagggcgcagaagccg
gaggcaccgaaggctcaggcgcctcacaaaccgcagcaacaggccgatgcgcgctacaag
gagtggtcgttcggcgagctgcccgagctcatggaaatcggcaagggcaaccagacgctg
atcggcttcccggcactgatcgatcacggcgaggctgtggggctggaagtgttcgacgag
ccggaaatcgcggccgtgaagcaccgcgcgggcctgcgccgcctgttcgcattgcagatc
cgggatgcgctcaagtacctcgagaagaacattcccgatctgcagaagatggccgtggcc
tacatgccgcttggcacgcaggaggaactgcgcgagcagatcatcgacgtggcgatcgat
cgcgcgttcctgcaggatccgttgcccacgagcgaagctgcattcaagcagcgcgtgcag
gatggccgggggcgcctcacgctgatcgccaacgaggtcgcacgcatggcgagcggcatt
ctggcggagtacgcggccgcgcagcgcaagatcaaggatacgaagaacgcggctgatgcc
acggctgacgcgagtgcacagctgcagcgcctgatgccgaagaacttcatcgccatcgcg
ccctgggcccagctcgggcactacgcgcggtacctgaaggcgatcaccattcgcctcgac
aagcaccgcacggatcccgcgcgcgacggtgccaagtccggtgagctcaagccgctggag
cagcgctactggcggctcgtggccgaacgcaaggggcaggtggatgcgcgcatgcaggag
taccgctggatgctggaggagctgcgcgtgagctttttcgcgcaggagctgcgcacgccg
tatccggtgagtgccaagcgcatggagaaggtctgggcgcagctgcagaactga
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