Diaphorobacter ruginosibacter: H9K76_17565
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Entry
H9K76_17565 CDS
T06813
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
drg
Diaphorobacter ruginosibacter
Pathway
drg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
drg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H9K76_17565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
drg03019
]
H9K76_17565
03009 Ribosome biogenesis [BR:
drg03009
]
H9K76_17565
Enzymes [BR:
drg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
H9K76_17565
Messenger RNA biogenesis [BR:
drg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H9K76_17565
Ribosome biogenesis [BR:
drg03009
]
Prokaryotic type
rRNA processing factors
H9K76_17565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
dnstrm_HI1420
Motif
Other DBs
NCBI-ProteinID:
QNN56341
UniProt:
A0A7G9RL66
LinkDB
All DBs
Position
3855415..3858582
Genome browser
AA seq
1055 aa
AA seq
DB search
MKRMLINATQPEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISKQYFAEGVSPSQAKIQDAIREGQELIVQVEKEERGNKGAALTTFIS
LAGRYVVLMPNNPRGGGVSRRIEGEDRAELKEAMDQLEYPKGMSIIARTAGIGRTAPELQ
WDLNFLLKLWKAVDDAAKAGKGAFLIYQESSLVIRAMRDYFNTDIGDILIDTDEIYEQAH
QFMSHVMPEHASRVKRYRDDAPLFSRFQIEHQIESAYSRTVTLPSGGAIVIDHTEALVSV
DVNSARAIKGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESKNRREVENR
LRDALRQDRARVQFGSISKFGLMEMSRQRLKPALSEGAHINCPRCGGSGHIRDTESSALQ
ILRIIQEESMKDNTAAVHCQVPVEVASFLLNEKRTEIAKIELKQRVNVMMIPNKSLDTPH
YKLERLKHDDPRLEDLQASYQLVEETEDQTKVTRRSQEPTNKQTPVIKGILPDAPAPQVE
PRPDAAARAAARANGQQQPRGNASAAPAPAPTPTVAPARPPEMGFIAWLKSLFGFGPSAA
PAAPAPVAAPAATPAAETREPRREGRGNNDRRRGGRDGNRSEGGRDAGATGENRNEGRGE
GRNGRRNERNDRGGEGRQARDGEQRGGERRNDRGERTERNDGEARREQRNGRDRNNEARQ
NGNNIPVVDASAPAQNPADDASADRPQRERRERGERGQRGERGERRERAPRTIDANAAAP
AGDSAPLLPMPDIDLSLNSGAEGNVPDATGQQPQAEGERRERRSRDRYGRDRRGRNGGNA
EGMDANGNAAETVADAAGVVVAESSTAFAATTAEAADSSTEGEAQPARRSYFSQSTTTAV
AVTPQEAVPAAPVAPATPKAVAAPAAAEPSVVVVSPSAEAIVVPAAQAVAPTTQATQDDV
PAGGMPRVGSYELPLRSLHELASASGLQWVNSDAEKIAVVQAAIAAEPKPVHVPRERPPV
VVFDEGPLVLVETRRDLARMPLPFELQEQQQQQQQ
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctcatcaacgccacgcagccggaagagcgccgcctggccatcgtcgac
ggccagaagctgctggactacgagatcgagatcgagggacgcgaacaacgcaagggcaat
atctacaaggcggtggtcacccgcgtcgagccctccctcgaagcctgcttcgtcgactac
ggcgaggaccgccacggtttcctgccgttcaaggaaatctccaagcaatactttgcagag
ggcgtctcgcccagccaggccaagatccaggacgcgatccgtgaaggccaggaactgatc
gtccaggtcgaaaaggaagagcgcggcaacaagggcgctgccctcaccaccttcatctcg
ctggcgggccgctacgtggtgctgatgcccaacaacccgcgcggcggtggcgtctcgcgc
cgcatcgagggcgaagatcgcgccgaactcaaggaggcgatggaccagctcgaatacccc
aagggcatgtccatcatcgcgcgcaccgccggtatcggccgcacggcgcccgagctgcaa
tgggacctgaacttcctgctcaaactctggaaggccgtcgacgacgccgccaaggccggc
aagggcgccttcctgatctaccaggaatcgagcctggtgatccgcgcgatgcgcgactac
ttcaacaccgacatcggcgacatcctgatcgacacggacgagatctacgaacaggcgcat
cagttcatgtcgcacgtgatgcccgagcatgcgagccgcgtcaagcgctaccgcgatgac
gctccgctgttcagccgcttccagatcgagcaccagatcgagtcggcctattcccgcacc
gtgacgctgccctcgggcggcgcgatcgtgatcgaccacaccgaggcgctggtgtccgtg
gacgtgaactcggcccgcgccatcaagggcggcgacatcgaggagaccgccacccgcacc
aacctcgaagccgccgacgaagtggcccgccagatgcgcctgcgcgacctgggcggcctg
atcgtcatcgacttcatcgacatggaagagtcgaagaaccgccgcgaggtggagaaccgc
ctgcgcgacgcgctgcgccaggaccgcgcacgcgtgcagttcggctcgatcagcaagttc
ggcctcatggagatgagccgccagcgcctgaagccggcactgtccgaaggcgcgcacatc
aactgcccgcgctgcggcggctccggccatatccgcgacaccgaaagctcggcgctgcag
atcctgcgcatcatccaggaagagtccatgaaggacaacaccgccgccgtgcactgccag
gtaccggtggaagtggcctcgttcctcctcaacgagaagcgcaccgagatcgcgaagatc
gagctcaagcagcgcgtgaacgtgatgatgatcccgaacaagtcgctcgatacgccgcac
tacaagctcgagcgactgaaacacgacgacccgcgcctggaagacctgcaggccagctac
cagctcgtcgaggaaaccgaagaccagaccaaggtgacgcgccgctcgcaggagcccacc
aacaagcagactccggtgatcaagggcatcctgccggacgcgcccgcaccgcaggtcgag
ccgcgtcccgatgcggcagcccgagcagccgcgcgcgccaacggccagcagcaaccacgc
ggcaacgccagcgcagccccggctcccgcacccacgccgaccgtggcacctgcccgtccg
cccgagatgggcttcatcgcctggctcaagagcctgttcggtttcggcccgtcggcagcg
cctgcggcgcccgcacccgtggcggcaccggctgcgacacccgccgcggagacgcgcgag
ccacgccgtgaaggccgtggcaacaacgaccgccgccgcggcggccgtgatggcaaccgc
agcgaaggtggccgcgatgccggtgccacgggcgaaaaccgcaacgagggtcgaggcgag
ggccgcaacggccgccgcaacgagcgcaatgaccgcggcggcgaaggtcgccaggcgcgt
gacggcgaacagcgtggcggcgaacgccgcaacgaccgtggcgagcgcaccgaacgcaat
gacggcgaggcccgccgcgaacagcgcaacggccgcgatcgcaacaacgaggcacgccag
aacggcaacaacatcccggtagtggatgcgtcggcgccggcccagaacccggcagatgac
gcctcggcggatcgtccgcagcgcgaacgccgtgaacgtggcgaacgcggccagcgcggt
gaacgtggcgagcgccgtgaacgcgcaccgcgcaccatcgatgcgaacgccgcggcaccc
gccggcgacagcgccccgctgctgccgatgcccgacatcgacctgtcgctgaacagcggt
gccgaaggcaatgtgccggatgcaaccggtcagcagccccaggcagaaggcgaacgccgc
gagcgccgctcccgcgaccgctacggccgtgaccgccgtggccgcaacggaggcaacgcc
gaaggcatggacgccaacggcaatgcagcggagaccgtggccgacgcagcaggtgtcgtg
gtcgccgaatcgagcaccgccttcgcagcgaccaccgccgaagccgcggacagcagcacg
gaaggcgaagcgcagcccgcacgccgcagctacttctcgcagagcacgacgaccgctgtc
gccgtgacgccgcaggaagcagttcccgccgcacctgtcgcgccagccacgccgaaggcc
gttgcggcaccggcagcagcagagcccagcgtcgtggtggtgagcccgtccgccgaagcc
atcgtggttcccgcggcccaggcggtcgcaccgacaacccaggcaacccaggacgacgtc
ccggctggcggcatgccacgcgtcggcagctatgaactgccgctgcgttcgctgcacgag
ctggcatccgcgtcgggcctgcagtgggtgaactccgacgccgagaagatcgccgtcgtt
caggccgccatcgcagccgagcccaagccggtccatgtgccgcgcgaacggccgccggtc
gtggtgttcgacgaaggccctctggtgctggtggaaacccgccgcgacctggcccgcatg
cccctgccgttcgagctgcaggaacaacagcagcaacagcagcagtaa
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