Diaphorobacter ruginosibacter: H9K76_20730
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Entry
H9K76_20730 CDS
T06813
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
drg
Diaphorobacter ruginosibacter
Brite
KEGG Orthology (KO) [BR:
drg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
drg03016
]
H9K76_20730
Enzymes [BR:
drg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
H9K76_20730
Transfer RNA biogenesis [BR:
drg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
H9K76_20730
Prokaryotic type
tRNA splicing ligases
H9K76_20730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QNN56891
UniProt:
A0A7G9RMR6
LinkDB
All DBs
Position
complement(4585828..4587063)
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AA seq
411 aa
AA seq
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MSDDKELNYNVAQVPNGVPIKMWTKGVPVEDEARNQLVNTSRLPIVFKHIAAMPDVHLGV
GATIGSVIPTIKAIIPAAVGVDIGCGMMAAKTTLRATDLPDNLARLRSAIERAIPHGFAP
KHRGRDPGAWDTPPEAVDQAWAGLVDEFNQLAELHPRLKNTNNHKHLGTLGSGNHFVEVC
LDQNDFVWFMLHSGSRGVGNAIGNHFIELAKKDAERNMRNLPDKDLAYFEEGAQYFGDYV
RGVSWAQKFAMKNREVMMTNLIAAVRKVIAKPFESHVEAVNCHHNYVQKEHHFGEDVFVT
RKGAVSAKRGEMGIIPGSMGARSYIVRGLGNPESFESCSHGAGRVMSRTKAKKLFTVADQ
IKATEGVECRKDADVIDEIPMAYKDIDAVMAAQQDLVEVVHTLKQVVCVKG
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgataaagaactgaactacaacgtggcacaagtgcccaacggtgtccccatc
aagatgtggaccaagggtgtgccggtggaagacgaggcgcgcaaccagctggtcaacacg
tcgcgcctgcccatcgtgttcaagcacatcgcggcgatgcccgacgtgcacctgggagtt
ggcgccaccatcggctcggtgattcccacgatcaaggcgatcattccggcggccgtgggt
gtggatatcggatgcggaatgatggccgccaagaccacgctgcgcgccaccgatctgccc
gataacctcgcgcggctgcgctccgcgatcgaacgtgcgattccccatggctttgcaccg
aagcatcgcgggcgcgaccccggtgcctgggatacaccgcccgaagcggtggaccaggcg
tgggctggcctggtggatgaattcaaccagttggcggaactgcatccacgcctgaagaac
accaacaaccacaagcatctgggaacgctgggttccggaaaccacttcgtggaagtctgc
ctggaccagaacgacttcgtgtggttcatgctgcactcgggttcgcgtggggtgggtaat
gccatcggcaaccatttcatcgagctggccaagaaggacgcggagcgcaacatgcgcaac
ctgcccgataaggatctggcgtatttcgaggaaggcgcgcagtacttcggagactacgta
cgtggtgtgtcctgggcacagaagttcgcgatgaagaaccgcgaagtgatgatgaccaac
ctgatcgccgccgtgcgcaaggtgatcgccaagccgttcgagtcgcatgtggaagcggtg
aattgccaccacaactatgtgcagaaggaacaccacttcggtgaggacgtgttcgtgacc
cgaaaaggcgcggtgagcgccaagcgcggcgagatgggaatcatccccggaagcatgggc
gcacgaagctacatcgttcgcggccttggaaaccctgagagcttcgagagctgcagccac
ggcgcgggccgggtgatgagccggaccaaggcgaagaagctgttcaccgtggccgaccag
atcaaggccaccgagggcgtggaatgccggaaggacgcggacgtgatcgacgagatcccc
atggcctacaaggacatcgacgcggtgatggccgcacagcaggacctggtggaagtggtc
cataccctgaagcaggtggtctgcgtgaagggttga
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