Devosia rhizoryzae: JI748_02085
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Entry
JI748_02085 CDS
T09886
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
drh
Devosia rhizoryzae
Pathway
drh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
drh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JI748_02085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
drh03019
]
JI748_02085
Enzymes [BR:
drh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JI748_02085
Messenger RNA biogenesis [BR:
drh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JI748_02085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QQR39831
UniProt:
A0ABX7C6U4
LinkDB
All DBs
Position
428947..430335
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AA seq
462 aa
AA seq
DB search
MTDFISLGLPTQLTDSLTAGGFTEPTKIQSQAIPKLLEGRDMLGIAQTGSGKTAAFGLPI
LAGLMELTGRPRPMTTRALILAPTRELAVQIEENLRKFAGSKMRLDTVLVLGGVSRYHQV
QKIAKGVDVVVATPGRLKDLLDDNKIKLNETRWLVLDEADRMLDMGFIAPVRAIAKQIGL
RRQTMLFSATMAAEVEDLAKTLLKDPIKVEAAPQGSTVVKIDQRVIMSGSKAKRGVLNDL
LADEKEGMERVIIFSRTKHGADRVAKNLAIDGHEAAAIHGNKSQNARQAALKGFANGSVR
ILVATDIAARGIDVQGITHVVNYELPDDPENYVHRIGRTGRNGASGIAITLCDGTEKSKL
RDVEKLIRRTLPVSGDVNLVEEVQAPRAPRNSAGAPGGARTARNPKPKDPRKFNTPRPGG
ERTKGGAPKADGARAKPAADGKPRWSKTQREAGRAKRAAVKA
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatttcatttcgctcggcctgccgacccaactcaccgacagcctgactgccggc
ggcttcaccgagcccaccaagatccagagccaggcgatccccaagctgctcgaaggccgg
gacatgctgggcatcgcccagaccggttcgggcaagacggccgccttcggcctgccgatc
cttgctggtttgatggaactgaccggccgtccgcggccgatgacgacgcgcgcgctgatc
ctggcgccgacgcgtgaactcgccgtgcagatcgaagaaaacctgcgcaagttcgcaggc
tcgaagatgcggctcgataccgtgctcgtcctcggtggcgtgtcgcgctaccatcaggtg
caaaagatcgccaagggcgtcgatgtcgtcgtggcgacccctgggcgtcttaaggacctc
ctcgacgacaacaagatcaagcttaacgaaacgcgctggctggtgctcgacgaggccgac
cgcatgctcgacatgggctttatcgctccggtgcgcgccatcgccaagcagatcggcctg
cgccgccagaccatgctgttctcggccacaatggccgccgaagtcgaagacctggccaag
acgctgttgaaggacccgatcaaggtcgaagcggcgccgcaggggtctactgtggtcaag
atcgaccagcgcgtgatcatgtcgggttcgaaggccaaacggggcgtgctgaacgacctc
cttgccgacgaaaaggaaggcatggagcgcgtcatcatcttctcgcgcaccaagcacggc
gctgatcgcgtggccaagaacctcgccatcgacgggcatgaagcggccgccattcacggc
aacaagtcgcagaacgcccggcaggccgcgcttaagggttttgccaacggctcggtgcgt
atcctcgtcgccaccgatattgcggcgcgcggcatcgacgtgcagggcatcacccatgtg
gtgaattacgagctgcccgacgatccggaaaactatgtgcaccgcatcggccgcactggc
cgcaacggcgcttctggcattgccatcacgctgtgcgacggcaccgaaaagagcaagttg
cgtgacgtcgaaaagctgatccgccgtaccttgccggtctcgggtgacgtcaacctcgtc
gaagaagtgcaggcgccgcgcgcgccgcgcaattcggctggtgcgccgggtggcgcccgc
accgcgcgcaaccccaagcccaaggatccgcgcaagttcaacaccccgcgtcccggtggc
gaacgcaccaagggcggtgcgcccaaggccgacggcgcccgcgccaagccagccgccgac
ggcaagccgcgctggagcaagacccaacgcgaagcgggccgcgccaagcgagcagcggtg
aaagcgtaa
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