Devosia rhizoryzae: JI748_06100
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Entry
JI748_06100 CDS
T09886
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
drh
Devosia rhizoryzae
Brite
KEGG Orthology (KO) [BR:
drh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
drh03032
]
JI748_06100 (topA)
03400 DNA repair and recombination proteins [BR:
drh03400
]
JI748_06100 (topA)
Enzymes [BR:
drh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
JI748_06100 (topA)
DNA replication proteins [BR:
drh03032
]
Prokaryotic type
DNA Topoisomerases
JI748_06100 (topA)
DNA repair and recombination proteins [BR:
drh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
JI748_06100 (topA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
HC2
HTH_24
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QQR40569
UniProt:
A0ABX7CBK5
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All DBs
Position
1217085..1219715
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AA seq
876 aa
AA seq
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MKVVVVESPAKAKTINKYLGKDYEVLASFGHIRDLPAKDGSVRPDEDFAMSWEVDTASKK
RVTDIANALKGADGLILATDPDREGEAISWHILDVLRAKKALKKDTPVQRVVFNAITKDA
VTAAMAKPRDIDMPLVDAYLARRALDYLVGFTLSPILWRKLPGSRSAGRVQSVALRLVSE
REAEIEKFKPEEYWSVEAQLAQGGKSFLARLFAVDGKKTDKLDIKNGEDAGALKALIEGG
QFNVANVEKKPTKRNPYAPFTTSSLQQDASSRLGLSPNRTMQIAQRLYEDGLITYMRTDA
VQMAPEGISMARSVIGKYFGEEYLPEKARIYQTKAKNAQEAHEAIRPTDMFKRPEQLNLD
ADQAKLYGLIWRRTLASQMKSAEIDRTTVDIAVNVPGRAVTLRATGSVVTFPGFLKLYGV
EVKSDEDTEDEDDRELPPLNVGDKPDIKKVEIEQHFTQPPSRFTEASLIKKMEELGIGRP
STYAATLTTLKDRDYVRLEGKALHPEDRGRIVTSFLESFFTRYVEYGFTAGLEEKLDQVS
AGELDYKVLLRDFWKDFTQATEEIKDLRVSEVLDALNDLLEDHIFPPKADGSDRRRCPTC
GTGTLSLKLGKFGAFIGCSNYPECKHTTQLSDAANGNSSQAAAGDGVLGTDPETGEEVHL
KSGRFGPYVQLGDGKEPKRSSLPKGWDAATLTLEKALQLLSLPREVGLHPESGLPISAGL
GRYGPFILHDGKYANLPDVEEVFTVGINRAVDLIAQKAAGGFQRASASAIKTFEYDDGPI
KIANGRFGPYAQLGKVYANIPKDIKPEDITLEQAVALITAKIEAGGGKKKAPAKKAAAKK
PAAKTAAAAKKPAAAKKAPAKKAAAKKIVDSEDVPF
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtcgtcgtcgttgaaagtccggctaaagccaagacaatcaacaagtatctcggc
aaggactatgaggtcctggccagcttcggccatatccgcgacctgccggccaaggacggt
tcggtgcgtccggacgaagatttcgccatgtcatgggaagttgatacggcgtccaagaag
cgcgtcacggacatcgccaatgcgctcaagggcgccgatgggctgatccttgctaccgac
cctgatcgcgaaggcgaggcgatttcctggcacattctcgatgtgctgcgggccaagaag
gcgctcaagaaagacacgccggtgcagcgcgtggtgttcaacgccatcaccaaggacgcg
gtaactgcggccatggccaagccgcgcgacatcgacatgccgctggtcgacgcctatctg
gcgcgccgggcgctcgattatctcgtcggctttacgctctcgccgatcctgtggcgcaag
ctgcccggctcgcgctcggctggccgcgtgcagtccgtggcgctgcggctcgtttccgag
cgcgaagcggaaatcgagaagttcaagccggaagaatattggagcgtcgaggcgcagctg
gcgcaaggcggcaagagtttcctcgcgcgtcttttcgccgtcgatggcaagaagaccgac
aagctcgacatcaagaacggcgaagatgccggagcgctcaaggcgctgatcgagggcggg
cagttcaacgtcgccaatgtcgaaaagaagccgaccaagcgcaatccctatgcgcccttc
acgacgtcgagcctgcagcaggatgcctcgtcgcgcctcggcctttcgcccaaccggacc
atgcagatcgcccagcgtctctacgaggacgggctgatcacctatatgcgtaccgacgcc
gtgcagatggcgccggagggtatttccatggcccgctcggtgatcggcaagtatttcggc
gaggagtatctgccggagaaggcacgcatctaccagaccaaggccaagaatgcgcaggaa
gcgcacgaggccatccgcccgacggacatgttcaagcgacccgagcagctcaacctcgat
gccgaccaggccaagctttatgggctgatctggcgccgcacgctggcctcgcagatgaaa
tcggccgagatcgatcgcaccacggtggacatcgccgtcaacgtgccgggccgtgccgtg
acgctgcgcgcgaccggatcggtcgtcaccttccccggcttcctcaagctttatggcgtc
gaggtgaagtcggacgaggacacagaggacgaagacgatcgcgagctgccgccgctcaat
gtcggcgacaagccggacatcaagaaggtcgaaatcgagcagcattttacgcagccgccg
tcgcgcttcaccgaggccagcctcatcaagaagatggaagagctcggcattggccgtccc
tccacttatgccgccacgctgacgacgctcaaggaccgtgactatgtgcggctcgagggc
aaggcgctgcatccggaagatcgcgggcgcatcgtgacctcgttcctcgagtcgttcttc
acgcgctatgtggaatatggctttacggcgggcctggaggaaaagctcgaccaggtttcg
gccggcgagctcgactataaggtgctgctgcgcgacttctggaaggatttcacgcaggca
accgaggagatcaaggaccttcgcgtgtccgaggtcctcgatgcactcaacgacttgctg
gaagaccacattttcccgcccaaggcggatgggtccgatcgccgccgttgcccgacctgc
ggcaccggcacgctgtcgctgaagctgggcaagttcggcgcctttatcggctgctcgaac
tatcccgaatgcaagcacacgacgcagctgtcggatgcggccaatggcaattcctcgcag
gctgcggccggcgacggggtgctcggcaccgatccggaaaccggcgaagaagtgcatctc
aaatctggtcgcttcgggccttatgtgcagctcggtgatggcaaggagccgaaacgctcg
tcgctgccaaagggttgggatgcggcaacgctgacgctggagaaggcgctgcagcttttg
tcgctgccgcgtgaagtgggtcttcatccggagtcggggctgccgatctcggcgggcctc
gggcgctatggtccgttcatcctgcatgacggcaaatatgccaacctgccggatgtggaa
gaggtgttcaccgtcgggatcaaccgtgcggtggacctgattgcgcaaaaggcggccggt
ggcttccagcgcgccagcgcttcggcgatcaagacctttgaatatgacgacggtccgatc
aagatcgcgaacggccgcttcggtccatatgcgcagttgggcaaggtctatgcgaatatt
cccaaggacatcaagcctgaggatatcacccttgagcaggctgtcgcgctgatcaccgcc
aagatcgaggctggcggcggcaagaaaaaggcaccggcgaaaaaggctgcggccaagaag
ccggcggcaaagactgcggctgcggcgaagaagccggctgcggccaagaaggcaccggcg
aagaaggctgcggcgaagaagatcgtagatagtgaggatgtgccgttttag
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