Devosia rhizoryzae: JI748_06720
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Entry
JI748_06720 CDS
T09886
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
drh
Devosia rhizoryzae
Pathway
drh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
drh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JI748_06720 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
drh03400
]
JI748_06720 (mfd)
Enzymes [BR:
drh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JI748_06720 (mfd)
DNA repair and recombination proteins [BR:
drh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JI748_06720 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
SecA_DEAD
RecG_dom3_C
AAA_25
Cas3-like_C_2
ERCC3_RAD25_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QQR40683
LinkDB
All DBs
Position
complement(1339289..1342777)
Genome browser
AA seq
1162 aa
AA seq
DB search
MNEQSPIKTPVRTISNVPDGMQPMALAKLVEDRIKAAPADPASVVFVARDGRRLQRMAEI
LGAMLPGHTILTLPAWDSLPYDRVSPNNVTLAARMNTLAALTSGAKGAVVLTAVNAFIQK
LPPRDVVKKMSFSAAVGRVVDSEKLIAWASNNGYLRVPTVRESGEYAVRGGLVDLYPASA
EAPLRFDFFGSQLETIRTFDPDSQRTTGTLKRIDLTPMSEVVLTEETIRRFRQNYTAAFG
GNTVDDTLYASVSGGSRYSGTEHWLPFFYEHMDRLADYVGDAPFVFDDQVKEAFADRAGQ
IADYYEARESARLAPPVAGAGAPYKPIKPELLYDIDVEPTELAGTTVIQFSPFLSPQTRK
GDDAGGRIAPSFAAERVASDVNLFQAVVDRLLAERKAGRRAIIACWSTGTRDRMAQVLKD
HGLTNPRLAENWRDAETTSAATTSLVVLPLESGFETEDLLVLSEQDILGERILRPQRKKK
ASDALTEAASLNAGDLVVHVDHGIGRFLGLKVIEAGGAPHECVELEYGGDTKLYLPVENI
ELLTRYGSDDGNVTLDKLGGVAWQAKKGKLKKRIREMAEQLIKLAAQRLLVKADVMDINA
GAYDEFAARFPYEETEDQLTAIDAVFDDITSGKVMDRLVCGDVGFGKTEVALRAAFAVAL
SGKQVAVVVPTTLLARQHFKTFSERFQGLPVRVRHASRMVPAAELKATKDGLADGQVDIV
VGTHALLSKTIKFKDLGLLIIDEEQHFGVTHKERLKELKANVHVLTLTATPIPRTLQLAL
TGVRDLSLLATPPVDRLAIRTFISPFDPLSIREALLREKYRGGQSFYVVPRIKDQPDIAE
FLRSQVPEVSFVAANGQMAPGELDDIMNAFYDNKFDVLLATTIVESGLDIPNANTLIVHR
ADNFGLAQLYQIRGRIGRAKARAYALFTVPADKKLTDTAERRLGVLQSLETLGAGFQLAS
HDLDIRGAGNLLGDEQSGHIREVGYELYQSMLEEAVANLKSGEEEYEDQNEWSPQISLGM
PVMIPEHYVPDLTLRMQLYRKLGDLDDIRYIDAAGAELIDRFGPLPEEVESLLKVILVKA
LCRQANVEKVDAGPKGAVLTLRNNEFPNPAGLVKLVSDPANQVRIKPDQKLVFVRNWPSA
EQRLKGAAAILSKLARLAETGA
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaacaatcacccatcaagaccccggtccgcaccatctccaacgtgcccgatggc
atgcagccgatggcactggcgaagctcgttgaggaccgcatcaaggcggctcccgctgat
ccggcaagcgtcgtcttcgtggcccgcgatggccggcgattgcagcgcatggccgagatc
ctgggcgccatgctgccgggacacacgatcctgacgcttcccgcctgggattcgctcccc
tacgatcgcgtctcgcctaacaatgtgacgctggctgcgcgcatgaacaccctcgccgcc
ttgaccagcggcgccaagggcgccgtggtgctgacggcagtgaacgccttcatccagaaa
ctgccgccgcgagacgtcgtcaagaagatgagtttttcagccgccgtaggccgcgtggtg
gacagcgaaaagctgatcgcctgggcgtccaacaacggctatctgcgcgtgccgactgtt
cgggaaagcggcgaatatgcagtgcgcggcggcttggtcgacctttatccggccagcgcc
gaagcgccgctgcgtttcgactttttcggcagtcagctggaaacgatccgcaccttcgat
cccgactcgcagcgcaccaccggaacgctgaaacgcatcgatctgacgccgatgagcgaa
gtggttctgaccgaagagaccattcgtcgattccgccaaaactatacggcagcgttcggt
ggcaataccgtcgatgacacgctctatgcctcggtcagcggcggctcgcgttactccggc
accgagcactggctgccgttcttttacgagcacatggataggctcgccgattatgtgggc
gacgcgcctttcgtcttcgacgatcaggtcaaggaagcctttgccgaccgcgccggccag
atcgccgattattacgaagcgcgcgaaagcgcgcggctggcgccgccggtcgccggggca
ggggccccgtacaagccgatcaagccagaactgctctatgatatcgacgtggagccgacc
gaactggccggcacgaccgtcatccagttttcgcccttcctctcgccgcagacccgcaag
ggtgacgatgccggggggcgcattgccccaagctttgccgctgagcgcgtcgcctccgac
gtcaacctgttccaggccgtggtcgatcggcttctggctgagcgcaaggcaggccgccgg
gcgatcatcgcctgctggagcaccggcacgcgcgaccgcatggcccaggttctcaaggat
catggcctcaccaatccgcgcctcgccgaaaactggcgcgatgccgaaaccaccagcgct
gcgacgacctctcttgtcgttctgcctctggaatcgggcttcgaaaccgaagatctcctt
gttctctccgagcaggacatcctcggcgaacgcatcttgcgcccgcagcgcaagaagaag
gcgtccgacgcgctgaccgaggcggcgagccttaatgctggcgacctcgtagtccatgtc
gatcacggtatcggtcgtttccttggtctcaaggtcatcgaagctggcggcgcgccgcac
gaatgcgtcgaactcgaatatggcggcgacaccaagctctacctgccggtcgagaatatt
gaactcttgacccgctacgggtcggacgacggcaatgtgacgctcgacaagcttggcggc
gttgcgtggcaggccaagaagggcaagctcaagaagcgcattcgcgagatggcggagcag
cttatcaagctggctgcgcaacgcttgctggtcaaagccgatgtcatggacatcaatgcc
ggcgcttatgacgaattcgccgcacgcttcccttatgaagagaccgaggaccagctgacc
gcgatcgatgccgttttcgacgacattacctcgggcaaggtcatggatcgtctcgtctgc
ggcgatgtgggcttcggcaaaaccgaagtggcactccgagccgcctttgcggtcgcactt
tcgggcaaacaggttgccgtggtggtccccacaaccctgctcgcgcgtcaacatttcaag
actttttccgagcgcttccagggcctcccggtccgcgttcgccatgcctcgcgcatggtg
cctgcggcagagcttaaggctaccaaggacgggctggccgatggtcaggtcgacatcgtc
gtcggcacccatgctttgctgtcgaagaccatcaagttcaaggacttgggcctcctcatc
atcgacgaagagcagcatttcggcgtcacccacaaggagcgcctcaaggagctcaaggcc
aacgtccacgtgctgacgctgaccgcaacgcccatcccgcgcaccctgcaactcgcactc
accggcgtccgcgacctttcgctgctggcaaccccgccggtcgatcgcctggcgatccgc
actttcatctcgcccttcgatccgctctcgattcgggaggcgttgttgcgagagaaatac
cgcggcggccaaagcttttacgtcgtgccgcggattaaggatcagccggacattgcagag
ttcttgcgcagccaggtgccagaggtttcgttcgtcgctgccaacgggcagatggcgccg
ggcgagctcgacgacatcatgaacgccttctacgacaacaaattcgacgtcctgctggcg
acgacgatcgtcgaatcgggcctcgatatccccaacgccaataccctgatcgtgcatagg
gctgacaatttcggtctggcccagctctaccaaatccgcggccgcatcggtcgcgccaag
gcccgtgcctacgcgctgtttacagtgccggcggacaagaagctcaccgacacggcggag
cgccggctgggcgtgctgcaatcgctggaaacgctgggcgcgggcttccagctcgccagc
cacgatctcgatattcgtggtgctggtaacctcctgggtgacgagcagtccggccacatc
cgcgaagtcggctacgagctttatcagtcgatgctcgaagaggccgtggcaaacctcaag
tccggcgaagaggaatacgaagaccagaacgagtggagcccgcaaatctcgctgggcatg
ccggtgatgatccccgagcactacgtgcctgacctgacgctgcgcatgcagctttaccgc
aagctcggcgatctcgacgatatccgctacatcgacgcggcaggcgcagaactgatcgac
cgcttcggtccgctaccggaagaagtcgagtcgctgctcaaggtcatcctggtcaaggcc
ctgtgccggcaggccaatgtcgaaaaggttgatgcagggcccaagggtgccgtgctgacg
ctgcgcaacaacgagttccccaacccggcagggctggtgaagcttgtgagcgatcccgcc
aaccaagtgcgcatcaaacccgatcagaaactcgtgttcgtgcgcaattggccttcggcg
gaacagcgcctcaaaggggctgcggcgatcctctccaagctcgcaagactggcagaaacc
ggggcttga
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