Devosia rhizoryzae: JI748_08310
Help
Entry
JI748_08310 CDS
T09886
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
drh
Devosia rhizoryzae
Pathway
drh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
drh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JI748_08310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
drh03019
]
JI748_08310
03009 Ribosome biogenesis [BR:
drh03009
]
JI748_08310
Enzymes [BR:
drh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JI748_08310
Messenger RNA biogenesis [BR:
drh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JI748_08310
Ribosome biogenesis [BR:
drh03009
]
Prokaryotic type
rRNA helicases
JI748_08310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QQR40966
LinkDB
All DBs
Position
complement(1675414..1677279)
Genome browser
AA seq
621 aa
AA seq
DB search
MSLPETILAPIASALAEKGYDSLTPVQSAVIEDNTLGRDLLVSAQTGSGKTVAFGMAIAP
TLLGDDETLPAPGAPLALVIAPTRELAMQVQRELTWLYAKMGAQTAQGVGGMDQRTERRA
LERGAHIVVGTPGRLRDHITRGALDMSALRAVVLDEADEMLDLGFREDLEFILAAAPEDR
RTLLFSATVPKPIAELAKTFQRDALRISATSSGEQHADIEYKLMAVPAAERENAVINTLL
WYDSTNTIVFASTREAVKHLSARLHNRGFDVVTLSGELTQAERTSALQSMRDGRARICVA
TDVAARGIDLPNLDLVIHADLPMNAETLLHRSGRTGRAGRKGTCVIIAPTHRKRVAQSIL
RTAKIEAENIAPPTAESIDARYRETILNNPQLSDEITEDERESVSSLLAKWSPEAIAAAY
FRQQLAARPVPEEITASLVVDDPRAPRTRETFAGGTWFKVSVGRKQRAEPRWLLPMICKA
GGVSKSAIGSIRIFDTETIFEVAADKVDGFLRSVGKNGTDEKGIYINAVDGPGERSERPA
KTRPPGPPKAYDPMAPRDTKADRKERYGKPKSEDFAERPAKAPRPPVAKDKGKPKWSKPA
DGTAAPKKPKVKDHKKKRAED
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
ttgtccctgcctgaaaccattcttgcccccatcgccagcgcccttgccgaaaaaggctat
gacagcctgaccccggttcagtccgctgtgatcgaggacaatacccttggccgggacctc
ctcgtttccgcccagaccggttcgggcaagaccgtcgcctttggcatggcgatcgcgccg
acgcttctgggcgacgatgaaacgctgcccgctcccggtgcaccgctggcgctggtcatc
gcaccgacgcgcgaactggccatgcaggtgcagcgcgagctgacctggctttatgccaag
atgggcgcgcagaccgcccagggcgtcggcggcatggaccagcgcaccgagcgccgggcg
ctggaacggggcgcccatatcgtcgtcggcacgccgggtcgccttcgcgaccatatcacc
cgcggcgcgctcgacatgtcggcccttcgcgccgtcgtgcttgatgaggccgacgaaatg
ctcgacctcggcttccgtgaagacctcgaattcatcctcgctgcggcccccgaagatcgg
cgcacgctccttttctcggccaccgtccccaagcccattgcagagttggctaagaccttc
cagcgtgacgcgttgcggatctcggccaccagttcgggcgagcagcacgccgatatcgaa
tataagctcatggccgtgcccgccgccgagcgcgagaacgccgtcattaacacgctgctc
tggtacgacagcaccaataccatcgtctttgcctcgacccgtgaggcggtgaagcacctc
tcggcgcgcctccacaatcgcggctttgatgtcgtgaccctttcgggcgaactgacccag
gccgaacgcaccagcgcgctccagtccatgcgcgatggccgcgcccgcatctgcgttgcc
accgacgttgccgcccgcggcatcgacttgcccaatctcgacctcgtcatccacgccgat
ctgccgatgaacgccgaaaccttgctgcaccgctccggccgcaccggaagggcggggcgc
aagggcacctgcgtcatcatcgcgccgacccatcgcaagcgtgtcgcccagtcgatcctg
cgcacggcaaagatcgaagcagaaaacattgcgccgccgacggcggaatcgattgatgcg
cgctatcgcgaaacgatcctcaacaatccgcagctgagcgatgaaatcaccgaggacgag
cgcgaaagcgtaagcagtcttctcgccaaatggtcacccgaggcgatcgcggcggcctat
ttccgtcagcagctggcggcgcgtccggtgccggaggagatcacggcatcgctcgtcgtc
gacgacccgcgggcaccccgcacccgcgagacctttgccggcggcacctggttcaaggtc
tcggtcggccgcaagcagcgcgccgagccacgctggcttttgccgatgatctgcaaggcc
ggtggcgtcagcaaatctgcgatcggctcgatccgcatcttcgataccgagacgatcttc
gaagtggcggccgacaaggtcgatgggttcttgcgcagcgttggcaaaaacggcacggac
gagaagggcatctacatcaatgccgtagatggcccgggtgaacgctcggaacgtccggca
aagacccgtccgccgggcccgcccaaagcttatgatccgatggcgccgcgcgacaccaag
gccgatcgcaaggagcgctacggcaagccgaagtctgaagattttgcggagcgcccggca
aaagccccgcgtcctccggtcgccaaggacaagggcaagccaaaatggtccaaacccgcc
gacggcaccgccgcgcccaagaagcccaaggtcaaggaccacaagaaaaagcgcgccgag
gactag
DBGET
integrated database retrieval system
