Devosia rhizoryzae: JI748_09635
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Entry
JI748_09635 CDS
T09886
Name
(GenBank) DEAD/DEAH box helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
drh
Devosia rhizoryzae
Pathway
drh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
drh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JI748_09635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
drh03400
]
JI748_09635
Enzymes [BR:
drh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JI748_09635
DNA repair and recombination proteins [BR:
drh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JI748_09635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
AAA_30
RecG_dom3_C
Cas3-like_C_2
SecA_DEAD
AAA_25
MFD_D3
AAA_22
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QQR38059
LinkDB
All DBs
Position
1938852..1942124
Genome browser
AA seq
1090 aa
AA seq
DB search
MTSKQSSTPAPARMEPVGLPSQDIRSAQQSEQPPSAGVAFRLLQTLRDEADGWIYLTTSE
RRAEETARALASFLPRRTVLHLPAWDCLPYDRAPASREIMGKRLRTLRECLEAEIAPILV
LSAEAAVQKLPPTGIVRETVFSLATGEKLDREALERFAHQTGYAVDDRVDEPGEIAFYGN
VVDIFPADAEDPVRITDIDGVIQAIMRYDPRTQRTSDELESLNLGPASEVIKALEDRQPG
QEHRLSEHYEDLASVFDYLPKAKMVFAGPVSERLTRVLEQITEAHASADQFGDMHPVSVT
GLYLDEKGWKAQTGKREPLEADLSDLAPMQAFSAERFSGRALAKYIREHESEPVVLCGSE
AERKRLLAILKRSALEATEMPDTLAELGAEPGLWLAGMDLDAGFVDTQSGLSVIAATDVL
GSRLHVEQVDLQTLIAPLELRVGDVVVHEEHGVGILRDLAQVKTGDVEEDTIQLEYQGET
KVMVPVTDFGKLWRYGAEADAVTLDRLNTDAWDKKRASVSLEIEEAAQHLAELAKQRLAA
TAEPLKPPKKDFDLLAQRFPYVETADQTAAIKAVLDDLASGHPMNRLICGDVGFGKTEIA
LRAAAAAALAGRQVAMIAPTTVLVRQHLESFERRFAGTDIKVGTLSRLNSAAEATATRDA
LRNGNIRIVVATHAIAGKDVELPELGLVIIDEEQRFGAKLKRQLQDMAANVHLLSMTATP
IPRSLQAAMVGLQDVSILATPPARRRPIRTFVAPFDAATARTALLREMRRGGQSFVVVPR
IEDIEHVQAELTRIVPDLEVTVAHGGLKPQEIDEALMGFANGRGHVLLATNIIESGLDVP
RANTMLVWRADRFGLSQLHQLRGRVGRGRSQGVAYLFLDPEQEVAENTRARLSTLEAFDR
LGSGFQISARDLELRGAGDLLGEDQAGHVHLIGSALYQQLLERALAQAKNEKAENIRPAE
LNIGSLGSIPPDYVPEAVVRINLYARLQRITKSDDLDAFAEELEDRFGPLPEATEQLIAV
SRLAIAAGTIGIDRIDAGPLGIALTAARDFDPVQIAKNLASESKIKERRIIVERKADLTA
TAQLSQLLRT
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atgaccagcaagcaatcgagcactcctgcaccggcgcgcatggagcctgtcggcctgccc
tcgcaagacatcaggagtgcccagcaaagcgagcagccgccttcggcaggcgttgcgttt
cggctgttgcagaccttgcgtgacgaggcggatggctggatctatctcaccacaagcgaa
cgccgggcggaggagacagcacgcgctctggcaagcttcctcccgcgccgaacggttctg
catctgccggcctgggattgcctcccctatgatcgggcaccggcaagcagagaaatcatg
ggcaagcgcttgcgcacgctccgggagtgtctcgaggcagagatcgctcccatcctggtg
ctgtcggccgaagccgctgttcagaaactaccgcccaccggcattgtgagagaaaccgtt
ttttccctcgccaccggcgaaaagctcgatcgcgaggcgcttgagcgctttgcccaccag
actggctatgccgtcgatgaccgggtcgatgaaccgggcgagatcgccttctatggcaat
gtggtcgacatctttccggccgatgccgaagacccggtgcgcatcaccgacatagatggg
gtcatccaggccatcatgcgttacgatccgcgcacacaacgcacatcggacgagttggaa
agcctcaacctgggccccgcctccgaggtgatcaaggctttggaagatcgccagcccggc
caggagcaccggctctccgagcactatgaagacctcgccagcgtctttgactacctgccc
aaggcaaagatggtgtttgccggtccggtcagcgaacgcctgacccgcgtcctggaacag
atcaccgaagcgcatgcctcggcagaccagttcggcgacatgcacccggtcagcgtgacc
gggctctacctcgacgagaaaggctggaaggcgcagacaggaaagcgcgagccgcttgaa
gctgacctctccgatcttgcccccatgcaggccttttcagccgagcgtttttcaggtcgt
gcgctggcaaaatacatccgcgagcacgagtcggagccggtcgtgctgtgcggcagcgag
gctgaacgcaagagactgctcgccattctcaagcgcagcgcgcttgaagcgaccgagatg
ccggacacgcttgccgaacttggcgcagaaccaggattgtggctggccggcatggatctt
gatgccgggtttgtggatacccagagcgggctttcggtcatcgccgccaccgatgtcctg
ggcagccgcctccatgtcgagcaggtggatcttcaaacccttattgcgccgctcgaactg
cgggtcggcgatgttgtcgtccatgaagaacacggcgtcggcattctgcgggatctcgcc
caggtcaagaccggcgacgttgaggaagacacgatccagctcgagtatcagggcgagacc
aaggtgatggtcccggtgaccgacttcggcaagctctggcgctatggcgcagaagcggac
gcggtaacgctggaccggctcaacacagatgcctgggacaagaagcgcgcctcggtcagc
ctcgaaatcgaggaagccgctcagcaccttgccgagctggcaaagcagaggctggctgcg
acggcggagccgctgaagccaccgaagaaagacttcgaccttcttgctcagcgcttcccc
tatgtcgaaaccgccgatcaaaccgcagccatcaaggcggtgctcgacgatctcgcttcc
gggcacccaatgaaccggctgatctgcggcgatgtcgggttcggcaagactgagatcgct
ttgcgcgcggcggccgcggcagccctggccggccggcaggtggccatgatcgcgccgaca
accgtgctggtgcgccagcaccttgaaagcttcgagcgccgcttcgccggtacggatatc
aaggtcggcacgctctcccggctcaacagcgccgctgaagcgaccgcaaccagggacgcc
ctgcggaacggcaacatccgcatcgtggtcgctacccatgccatcgccggcaaggacgtc
gaattgcccgagctcggcctcgtcatcatcgacgaggagcagcgctttggcgccaagctc
aagcggcagctgcaggacatggctgccaatgtgcatctgctttccatgacggcaacgccg
atccctcggtcgctccaggcggccatggtgggtcttcaggacgtcagcatccttgcaacg
ccccctgcccgccgtcggccaatccgcacctttgtcgcccctttcgacgccgccactgct
cgcactgccctgctgcgcgagatgcggcgcggcggacaaagctttgtcgttgttccgcgc
atcgaggacatcgaacacgttcaggcagagctcacgcggatcgtgcccgaccttgaagtt
accgtggcccacggcgggctcaagccgcaggagatcgacgaggcgctgatgggcttcgcc
aatggccggggccatgtgctgcttgccaccaatatcatcgaaagcggcctcgatgtgccc
cgagccaacaccatgctggtctggcgcgccgaccgctttggcctgtcgcaattgcaccag
ttgcgcgggcgtgtcggacgggggcgcagccagggcgtggcctacctgttccttgatccc
gaacaggaggtcgccgaaaatacaagggctcggctttcgacgctcgaagccttcgaccgg
ctcggttcggggttccagatcagtgcccgcgatcttgaactgcgcggggccggtgacctt
ttgggtgaagaccaggccggccatgtgcacctgatcggctctgcgctctaccagcagttg
cttgaacgcgccctcgcccaggccaagaacgagaaggccgaaaacataaggcccgcagaa
ctcaacatcggcagcctgggcagcattccgccggactacgtgcccgaagcggtggtgcgc
atcaacctttacgcccgcctccagcgcatcaccaaatccgacgacctcgacgcattcgcc
gaagagctggaagaccgtttcggaccgctgccggaagccaccgagcagttgatcgccgtc
tcccgccttgccatcgctgccggcacgatcggcatcgaccgcatcgacgcaggacccctg
ggaatcgcgctgaccgcggcgcgagacttcgatccggtacagatcgccaagaacctagcc
tcagagtccaagatcaaggaaaggcgcatcatcgtcgaacgcaaagcggacctgacggca
acggcgcagctgagccagctgctgaggacataa
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