Devosia rhizosphaerae: QOV41_02945
Help
Entry
QOV41_02945 CDS
T10830
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
dri Devosia rhizosphaerae
Brite
KEGG Orthology (KO) [BR:
dri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dri03019
]
QOV41_02945 (hrpB)
Enzymes [BR:
dri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
QOV41_02945 (hrpB)
Messenger RNA biogenesis [BR:
dri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
QOV41_02945 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
AAA_30
CON_HrpB
Flavi_DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
WIJ25737
LinkDB
All DBs
Position
complement(579761..582205)
Genome browser
AA seq
814 aa
AA seq
DB search
MSLPPLPIDDALPALHAALASGPYAVLVAPPGAGKTTRVPLALLDASWRGDGRILMLEPR
RLAARAAAAQMARLLGENVGENVGYRVRMDNKVSAKTRIEIVTEGVFTRMALDDPEFTGI
AAVLFDEFHERSLDGDLGLALALDAAALRPDLRVLVMSATLDGARVARLLGDAPVIESRG
RAFPVETLYREPDPLGRLEDQVTAAILATLREHEGSMLVFLPGQGEITRTAERLASRVPA
QVDIAPLYGQLTPAEQDRAIRPAEGGRRKIVLATSIAETSLTIDGVRIVIDSGFRRVPVY
EPGTGLTTLETRRVSRAAADQRRGRAGRTSPGIAIRLWNQGQTAALEPFDTPEILAADLS
PLALDLAAWGVTDPAALAFLDPPPKPAWAEAVGLLQRLDALDGGGHITAMGKQLARLPLH
PRLAHMVIAAAGEDDATSAAELAMLLSERGLGGDSIDLAQRLDRFRTDRSKRATDARALA
RRWASLAGGGIGSNRAPGRHLARAFPDRIAQAAGARGRFRLANGRQATLEQTDALGAAPF
LVVADVTGTAATSRIRSAAALDRADLEELFAPRIIHGEILSFDPASGSVRARRTRQLDAL
RLADEPVAISDLHQAAQLLAEAALDRPESLPWSRDQKALRARASFLHQTIGAPWPDLSDQ
ALATDPDWLAPHLLGETRLAAITAEHLGAALDTLLPWSARQEIDKLLPSHFNAPSGSHLP
IDYAAENGPALEVRVQELFGLDRHPAVAGGKVPLLLVLLSPAHRPIQTTRDLPGFWRGSW
RDVAKDLKGRYPRHFWPDDPLTAQATNRAKPRGT
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atgtccctgccgcccctgcccatcgacgacgccctgccggccctccatgcggccttggcc
tccggcccctatgccgtgctcgtcgcgccgcccggcgccggcaagaccacccgcgtgccc
ctcgccctgctcgatgcatcctggcgcggcgacggtcgcatcctcatgctcgagccacgc
cgcctcgccgcgcgcgccgccgccgcgcagatggcccggctgctcggcgaaaacgtgggg
gagaacgtcggctatcgcgtgcgcatggacaacaaggtctcggctaagacccgtatcgag
atcgtcaccgaaggtgtcttcacccgcatggcgcttgatgatcccgagttcaccggcatt
gccgccgtgctctttgacgaattccatgaacgcagtctcgatggcgatctcggccttgcc
ctggcgctcgacgccgccgccctccgccccgatctgcgcgtcctcgtcatgtccgcaacg
ctcgacggcgcccgcgtcgcccggctcctgggcgatgcacccgtgatcgaaagccgcggc
cgcgcctttccggtggaaacgctttaccgcgaacccgatccgctgggccgccttgaagac
caggtcactgccgctatcctcgcgaccctgcgtgagcacgaaggctccatgctcgtcttt
ctgcccggccaaggcgagatcacccgcacggccgagcgcctcgccagccgcgtcccggcc
caggtcgatatcgccccactctatggccagctcaccccggccgagcaggaccgcgccatt
cgccccgccgaagggggccgccgcaagattgtgctcgcgacctcgatcgccgaaacgtcg
ctgaccatcgatggggtccgcatcgtcatcgattccggcttccgccgcgtgcccgtctat
gagccgggcaccggcctcaccaccctcgaaactcggcgcgtctcgcgcgctgccgccgac
cagcgccgcggccgcgccggccgcactagccccggcatcgccatccgcctgtggaaccag
gggcagaccgccgcccttgaaccctttgacacgcctgagatccttgcggccgatctcagc
cccctcgccctcgatctcgccgcctggggcgtcaccgatccagcggcgctcgcctttctc
gatccgccgccaaaacccgcctgggccgaagccgtgggcctgttgcagcgcctcgacgcc
ctcgatggcggaggccacatcaccgctatgggcaagcaactcgcccgcctgccgctccat
ccgcgcctcgcccacatggtcattgccgctgcgggggaagacgacgccaccagcgcggcg
gaactcgccatgctcctgtccgaacggggcctgggcggtgacagcatcgacctcgcccag
cgtctcgatcgcttccgcaccgatcgctccaagcgcgccacggacgcacgagcgcttgcc
cgccgctgggcgagccttgctggtggaggcattggcagcaaccgcgccccgggccgtcac
ctcgcccgcgcctttcccgatcgcattgcccaggccgccggtgcgcgcggccgctttcgc
ctcgccaatggccgccaggctaccctcgagcagaccgatgcgctcggcgcagcgcccttt
ctggtggtcgccgatgtcaccggcactgccgccaccagccgcatccgcagcgccgccgcc
ctcgaccgcgctgatctcgaagagctctttgccccccgcatcatccatggcgaaatcctc
agcttcgaccccgcgtcgggcagcgtgcgcgcccgccgcacccgccagctcgacgcactc
cgcctcgccgacgaaccggtagccatctccgacctccaccaagccgcgcagctgctcgcc
gaagccgccctcgatcgccctgaaagcctgccctggagccgcgaccaaaaggccctgcgc
gcccgtgccagtttcctccaccagaccatcggcgcgccctggcccgatctctccgatcag
gcgctcgcgaccgatcccgactggctcgccccgcatctcctaggcgaaacccgccttgcc
gccatcaccgccgagcatctgggcgccgcgctcgatacgctcctcccctggtcggcgcgc
caggagatcgacaagctcctccccagccatttcaatgccccctccggctcgcacctgccc
atcgactacgccgccgaaaacggccccgcccttgaagtgcgtgtgcaggagctcttcggg
ctcgaccgccatccggcggtcgccggcggcaaggtgccattgctgctggtcctcctctcc
cccgcccaccggcccatccagaccacgcgcgacctgcccggcttctggcgcggctcctgg
cgcgatgtcgccaaggatctcaagggccgttatccccgccacttctggcccgacgatccc
ctcaccgcccaggcgaccaaccgcgccaaaccaagaggcacctaa
DBGET
integrated database retrieval system
