Devosia rhizosphaerae: QOV41_05500
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Entry
QOV41_05500 CDS
T10830
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dri Devosia rhizosphaerae
Pathway
dri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QOV41_05500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dri03019
]
QOV41_05500
Enzymes [BR:
dri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QOV41_05500
Messenger RNA biogenesis [BR:
dri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QOV41_05500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Hydrolase_like
DUF6611
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
WIJ26218
LinkDB
All DBs
Position
1142519..1143982
Genome browser
AA seq
487 aa
AA seq
DB search
MTDFISLGLPTVITDSLTAAGFTEPTKIQSQAIPKLLDGKDMLGIAQTGSGKTAAFGLPI
LAGILNLTGRPRPMTTRALILAPTRELAVQIDENIRKFAGTKMGLSTVLVLGGVSRYHQV
QKIAKGVDVVVATPGRLKDLLDDGKIRLNETRWLVLDEADRMLDMGFIAPVKHIAKAIGP
RRQTMLFSATMAPEIADLAKGLLNDPVRVEATPQGSTVVKIDQRVILSGAKAKRGVLNEL
LGSETENMERVIIFSRTKHGADRVAKNLELDGHKAAAIHGNKSQNARQAALKGFSSGDVR
ILVATDIAARGIDVPGITHVVNYELPDDPENYVHRIGRTGRNGASGIAITLCDGTERGKL
RDVERLIRRTLPYTGDLSLANNTGVVEAPRSAYKPAGNRPGPRSSRNPKQPPVDRRAPAE
RRPFADFAKQVGERGASAEAPRRPDGQVNRVRRDVESGKPIAAKPAKGKQRWGKPQKDAG
RVRRANG
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
ttgaccgattttatttccctcggcttgccgaccgtcatcactgacagcctgaccgctgcc
ggctttaccgaacctaccaagatccagtcccaggccattcccaagctgctcgacggcaag
gacatgctgggcatcgcccagaccggctcgggcaagacggccgccttcgggttgccgatc
ctagcgggcattctcaacctcaccggccgtccgcggccgatgaccacccgcgcgcttatt
ttggcgccaacccgtgagctagctgtccaaatcgacgagaacatccgcaagtttgctggc
accaagatgggcctttccaccgtgctcgtccttggtggcgtctcgcgctaccatcaggtg
cagaagatcgccaagggcgtggacgtcgttgtcgctaccccgggtcggctcaaggacttg
ctggatgacggcaagatccgcctaaacgaaacgcgctggctggtgctcgacgaagccgac
cgcatgctcgacatgggctttatcgcaccggtcaagcacatcgccaaggctatcggcccg
cggcgccagaccatgctgttctcggccaccatggcgccagaaatcgccgatttggccaag
ggtctcttgaacgacccggttcgggtcgaagcaacgccgcagggctccaccgtggtcaag
atcgaccagcgggtgatcctctcgggcgctaaggccaagaggggcgtgctcaacgagctg
ctgggcagcgaaaccgaaaatatggaacgcgtgatcatcttctcgcgcaccaagcatggc
gcagaccgcgttgctaagaatttggaactggacggccacaaggccgcggccattcacggc
aacaagagccagaatgcgcgccaggcggcgctcaagggcttctcgtcgggtgacgtgcgc
atcctcgtggcgaccgatatcgcggcgcgcggcatcgacgtgcccggcatcacccatgtg
gtgaactatgagctgccggacgatcccgagaactacgtgcaccgcatcggccgcactggt
cgtaacggcgcatctgggattgccatcacgctgtgcgatggcactgaacgcggtaagctg
cgcgatgtggagcggctgatccgccgcacattgccctatacgggcgacctcagcctcgcc
aacaatacgggcgtcgtggaagcaccgcgttccgcctacaagccagccggcaaccgcccg
gggcctcgctcttcgcgtaatcccaagcagcctccggtggatcgccgggcccctgccgag
cgtcggcccttcgccgattttgccaagcaggtaggcgagcgtggcgcgagtgcggaagct
ccgcgccggcccgatggtcaggtgaaccgcgtccgccgcgatgtcgaaagcggcaagccg
atcgccgccaagccggcaaagggtaagcagcgctggggcaagcctcagaaggacgctgga
cgcgtccgccgcgccaacggctaa
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