Devosia rhizosphaerae: QOV41_11390
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Entry
QOV41_11390 CDS
T10830
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
dri Devosia rhizosphaerae
Pathway
dri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QOV41_11390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dri03019
]
QOV41_11390
Messenger RNA biogenesis [BR:
dri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QOV41_11390
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
RMMBL
Lactamase_B
Motif
Other DBs
NCBI-ProteinID:
WIJ23671
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Position
complement(2301510..2303183)
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AA seq
557 aa
AA seq
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MAKNQRDELVFVPLGGVGEIGMNMAAYGFGPERSRKWIVVDCGVTFGGPDLPGIELIMAN
PEFLEDRADDVLALILTHSHEDHYGAVLDLWPGFEKPVFATPFTAAMLAAKRAGDGIVEN
VDLTIMQPGKPFTVGPFTIEPINVAHSIPESNALLITTPAGRVLHTGDWKLDPTPVGNQP
TDVARLQRIGEDTSSPLALICDSTNALKEGESPSEAEIAASLDRLIANAPQRVAVTTFAS
NVGRVISIVRAAERAGRQVVMSGRSLHRIMGIAREIGMLEGLPPLLDQDAYKSIARDKCV
LICTGSQGEARAAIARIARGEHPVIDLNAGDRMIFSSWAIPGNEREVIDIQNRLIDRGVE
VITANDDLVHVTGHPRRGELRKMYGWVKPEVLVPVHGEAIHLQAHAKLGREAGIPNVCEA
RNGDMVRLFPEPLTFPSEVRTGELYLDGLVLCTPEESGVKGRRRLSFGGHVVVSVCVNSS
GHIVSGPDVVIEGLPETEDESLGDLVEDTIANVLKSVPPKRRSDTEMLNSALFKAIRNEV
NAYWGRKPNVSVFVHRV
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atggctaagaaccaaagggatgagctcgtctttgtgccgcttggcggcgtcggcgaaatc
ggcatgaacatggcggcgtacgggttcggtcccgaacggtcacgtaagtggatagtggtc
gattgcggcgtcaccttcggcgggccagacctacctggcatcgaactcatcatggccaat
cccgagttcctggaggaccgcgccgacgatgtcctggcgctcatcctgacgcactcccat
gaggaccactacggtgccgttctcgacctgtggcccggcttcgagaagcccgtcttcgcc
acgcctttcaccgcggccatgctggcggcaaagcgggcaggggacggcatcgtcgagaat
gtcgaccttaccataatgcagcccgggaagcccttcactgttggcccattcaccattgag
ccgatcaatgtcgcgcattcgatccccgagtcgaacgcacttctgatcaccacccctgcc
gggcgcgttttgcacaccggcgactggaagctcgatcctacgccagtgggcaatcagccg
accgatgtggctcgtctccagagaattggcgaggacacttcaagcccgctggctctgatt
tgcgactcgaccaacgccctcaaggagggggaaagcccaagcgaggcggagattgccgct
tctttggacaggttgattgcaaacgcgccgcagcgggttgccgtaacgacgttcgcttcc
aacgtcggacgggtgatttcaattgttcgcgcagcggagagagccgggcggcaggtggtc
atgtcggggcgctcgctgcataggatcatgggaattgcccgcgagatcggtatgctggag
gggcttccgccgttgcttgatcaagatgcctacaagagcattgcccgcgacaaatgcgtg
ctgatctgcacgggctcgcagggagaggcacgcgctgccattgctcgcatagctcggggc
gagcacccagtcatcgacctcaatgccggcgaccgcatgattttctcatcttgggccatc
cccggcaacgagcgggaagtcatcgatatccagaaccgtctgattgaccggggcgtcgaa
gtcattacagccaacgatgatctcgtccatgtcacaggacacccgcgtcgcggcgaactt
cgaaagatgtatggctgggtgaagccggaggtcctggtgccggtgcatggtgaagcgatc
catctccaggcgcatgccaagctcgggcgcgaagctggcatccccaatgtctgcgaagcg
cgcaatggtgacatggtgcggctctttcccgagccactcacattcccgagcgaggttcgc
accggcgagctctatctggatgggctggtactctgcacacctgaagaatctggcgttaag
gggcgccgtcgtttgtcattcggcggccatgtggtggtcagcgtctgcgtaaatagcagt
gggcacattgtgtcgggtcccgatgtcgtcatcgaaggactacctgaaactgaggacgag
tcgttgggcgacctggtcgaagacaccatcgctaacgttctcaagtcggttccgccaaag
cggcggagcgacactgagatgctgaactccgcgctgttcaaggcgatccgcaacgaagtg
aacgcctattgggggcgcaagcccaatgtgtcggtctttgttcatcgggtttag
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