Devosia rhizosphaerae: QOV41_11600
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Entry
QOV41_11600 CDS
T10830
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dri Devosia rhizosphaerae
Pathway
dri03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QOV41_11600 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dri03400
]
QOV41_11600 (mfd)
Enzymes [BR:
dri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QOV41_11600 (mfd)
DNA repair and recombination proteins [BR:
dri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QOV41_11600 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
RecG_dom3_C
AAA_16
SecA_DEAD
AAA_25
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WIJ23710
LinkDB
All DBs
Position
complement(2343245..2346730)
Genome browser
AA seq
1161 aa
AA seq
DB search
MNEHLPQRPTRTIANVPDGMQPMQLAKLVQQRLETAPDDKVSLVFVARDGRRLQRMADVL
RVMMPGHQLLMLPAWDSLPYDRVSPNNVTIAARMNTLAALTGEAKGAIVLTAVNALIQKL
PPRDIVETMSFSAAAGRVVDSEKLIAWAANNGYLRVPTVRESGEFAVRGGLIDLFPANAE
APLRFDFFGSQLETIRTFDPDSQRTTGQLKRIDLTPMSEVVLNEETIKRFRQNYTAAFGG
NTVDDPLYASVSGGSRYSGTEHWLPFFYEHLDALADYTGDAPFVFDDQSVEAYGERAEQI
RDYYETRESARLLPAVAGAGAPYKPIQPGLLYDVDTHPYQLAGASVIQLSQFMAPETKAV
DDAGGHLPPSFAAERQSAETNLFQAIVDRLLAERRNGRRSVVACWSAGTRDRMAQVLQDH
GLNNPRLADNWRDAETTSAATTSLVVLPLETGFETKDLLVLSEQDILGERILRPQRKKKA
SDALTEAASLAAGDLVVHVDHGIGRFLGLKVIQAGGAPHECVELEYGGDTKLYLPVENIE
LLTRYGADDASVTLDKLGGVAWQAKKGRLKKRIREMAEQLIKIAAARQLTKAEAVDINSG
AYDEFVARFPYEETEDQLNAIEAVFDDLTSGRVMDRLVCGDVGFGKTEVALRAAFAVALS
GKQVAVVVPTTLLSRQHFKTFSERFAGLPVRVRHASRMVSASELKATKEGLADGQVDIVV
GTHALLSKTIKFKDLGLLIIDEEQHFGVGHKERLKELKANVHVLTLSATPIPRTLQLALT
GVRDLSLLATPPVDRLTIRTFIAPFDPLSVREALLREKYRGGQSFYVVPRIKDQHEVAEF
LRAQVPEVNFVVANGQMPPGELDDIMNAFYDNKFDVLLATTIVESGLDIPNANTLIVHRA
DQFGLAQLYQIRGRIGRSKQRAYALFTVPPDRKLTDTAERRLGVLQSLESLGAGFQLASH
DLDIRGAGNLLGDEQSGHIREVGFELYQAMLEEAVANLKSGEEDYEDKNEWSPQISLGMP
VMIPEHYVPDLQLRMQLYRRLGDLTDIRDIDAAGAELIDRFGPLPDEVEALLKVILVKAL
CRKANVEKVDAGPKGAVLTLRNNEFPNPAGLVKLVSDPANQVRIKPDQKLVFVRNWPNPE
ARLKGAAAILSRLAKLVEEMS
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaacatcttccccagcggccaacgcgcaccatcgccaatgttcccgatggcatg
cagcccatgcaactggccaaactggtccagcagcggctggaaacggcgcctgacgacaag
gtcagcctagttttcgtggcgcgcgatggtcgccggctgcagcgcatggccgatgtcctg
cgtgtcatgatgccaggacaccagctgctgatgctacccgcctgggacagcctgccctat
gatcgggtgtcgcccaacaacgttacgattgctgcccggatgaacaccctcgcggcgctg
accggcgaggccaagggcgccatcgttctgacggccgtcaacgccctcattcagaagctg
ccgccgcgcgacatcgtcgagaccatgtcgttctcggccgccgccgggcgcgtggtggac
agcgagaagctgatcgcctgggccgccaacaacgggtatctgcgcgtgccgacggtgcgc
gagagcggcgagttcgccgtacgcggcgggctgatcgacctcttcccggccaatgccgaa
gcgccgctccggtttgacttcttcggcagccaacttgagaccatccgcaccttcgatcct
gactcccagcgcaccaccggacagctcaagcgtatcgatctgacgccgatgagcgaggtc
gttctcaacgaagagaccatcaagcgtttccgccagaactacacggcggcctttggcggc
aatacggtcgatgatccactctacgcctcggtcagcggtggctcgcgctactcgggcacc
gagcactggctgcccttcttctacgagcacctcgatgcactggctgactacaccggcgac
gcgcctttcgtgttcgatgaccagtccgtcgaggcctatggcgaacgtgccgaacagatt
cgcgactactacgagacgcgtgagtcggctcggctgttgccagcggtagccggggcaggg
gcgccctacaagccgatccagcctggcctgctctacgatgtcgatacgcacccctaccag
ctagccggtgcctcggtcattcagctgtcccagttcatggcgcccgaaacgaaggccgtg
gacgacgccggcgggcacctgccgccgagctttgctgccgagcggcagtccgcagagacc
aatctattccaggctatcgtcgatcggctcctcgccgagcggcgcaacggccgtcgcagt
gtcgttgcctgctggagtgccggtacgcgcgatcgcatggcgcaggtgctgcaggaccat
ggccttaacaatccaaggctcgccgacaattggcgcgatgccgagacgaccagcgccgcc
accacgtctctcgtggtgctgcccctggaaacaggtttcgagaccaaggacctgctggtt
ctttccgagcaggatatccttggcgaacgcatcctgcggccgcagcgcaaaaagaaagcc
tccgatgccctgaccgaagctgcgagccttgcggcgggcgaccttgtcgttcacgtcgac
catggcatcggccgcttcctcgggctcaaggtcattcaggctggtggcgccccgcatgaa
tgtgtcgagctcgaatatggtggcgacaccaagctctatctcccggtcgagaacatcgag
ctgctgacgcgctatggggctgacgatgccagcgttaccctcgacaagctcggtggcgtc
gcatggcaggccaagaagggccgtctcaagaagcgcatccgcgagatggcggagcagctc
atcaagatcgcggcggcccggcagctcaccaaggctgaggccgtcgacatcaattcgggc
gcctacgacgagttcgtggcgcgcttcccctatgaagagacggaagaccagctcaacgcc
atcgaggcggtgttcgatgatctgacctcggggcgcgtgatggatcgcctggtctgtggc
gatgtgggtttcggcaagaccgaggtggcactccgggccgccttcgccgtggcgctttcc
ggcaagcaggttgccgtggtggtaccgacgacgctgctctcacgccagcacttcaagacc
ttctccgagcgcttcgccggccttcccgtgcgggtccgccatgcctcgcgcatggtcagc
gcctccgagctcaaggcgaccaaggaaggacttgcggacgggcaggtggatatcgtggtg
ggcacccacgcgctgctcagcaaaaccatcaagttcaaggacctcgggctgctcatcatc
gacgaggagcagcactttggcgttggtcacaaggagcgcctcaaggagctcaaggccaat
gttcatgtgctgaccctgagtgcgacccctatcccacgcacgctgcaacttgcactcacg
ggcgtccgcgatctcagcctcttggcgacgccgccggtggaccggctcaccatccgcacc
tttattgcaccgtttgatccgctttccgtgcgcgaagcactgttgcgcgagaagtatcgt
ggtgggcagagcttctatgtggtgccgcgcatcaaggaccagcacgaggtcgccgagttc
ctgcgggcgcaggtcccggaggtgaatttcgtcgtcgccaacggccagatgccgccgggc
gaactcgacgacatcatgaatgctttctacgacaacaagttcgacgtgttgctcgccacc
accattgtcgaatcagggcttgatattcccaacgccaacacgctgatcgtccatcgagcc
gatcagtttgggctcgcgcaactctatcagatccgcggtcgcattgggcgcagcaagcag
cgcgcctatgccctcttcaccgtgccgcccgatcgcaagcttaccgatactgccgagcgg
cggcttggcgtgctgcaatcgctcgaaagtctcggtgcagggttccagcttgccagccat
gacctggatattcgcggtgcgggtaatctcctgggtgacgagcagtcgggccacatccgc
gaagtcgggttcgagctctaccaagccatgctcgaggaggctgtcgccaacctcaagagc
ggtgaggaggattacgaggacaaaaacgagtggagcccgcagatctctctcggcatgccg
gtgatgatcccagagcactatgtacccgacctgcagttgcgcatgcagctttaccgccgc
ctgggtgacctcaccgacatcagggacatagatgctgcgggtgccgagctaatcgaccgc
ttcggcccgctgccggatgaagttgaagcgctgcttaaggttatcctggtgaaggctttg
tgtcgcaaggctaacgtcgagaaggtggatgcaggccccaagggcgctgtactgacgctg
cgcaacaacgagttccccaatccggctgggttggtgaagctggtcagcgatcctgccaac
caggtgcgtatcaagcccgatcagaagctcgtctttgtgcggaactggcccaacccggag
gcgcgtctcaaaggcgcagccgcgattctctcacgcttggccaagctcgtggaagagatg
tcgtag
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