Desulforamulus reducens: Dred_3066
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Entry
Dred_3066 CDS
T00494
Name
(GenBank) Excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
drm
Desulforamulus reducens
Pathway
drm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
drm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Dred_3066
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
drm03400
]
Dred_3066
DNA repair and recombination proteins [BR:
drm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Dred_3066
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Dred_3066
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_22
AAA_19
DUF87
Kinesin
FlaG
HerA_C
AAA_16
AAA
AAA_7
TrwB_AAD_bind
LETM1_C
Motif
Other DBs
NCBI-ProteinID:
ABO51568
UniProt:
A4J915
LinkDB
All DBs
Position
complement(3330759..3332777)
Genome browser
AA seq
672 aa
AA seq
DB search
MEFKLKSDFSPRGDQPRAIEKLVAGIDKGLRHQVLLGATGTGKTFTMANIIQEVKRPTLI
LAPNKTLAAQLCSEMKEFFPENSVEYFVSYFDYYQPEAYIPHTDTYIEKDSSLNDEIDKL
RHSATTALLERRDVIIVASVSCIYGLGNPETYRDLVLSLRVGGTYDRDAILRKLVDIQYE
RNDIDFSRGKFRVRGDVIEIFPANASERALRVELFGDEVDRLLEIDVVTGEILGQRQHIA
VFPASHFVTAEDNMKRAITTIEAELEQRLQELRAADKLLEAQRLQQRTQYDLEMMAEVGF
CSGIENYSRHLTGRAPGESPFTLLDFFPEDWLLIIDESHVAVPQIGGMYEGDRSRKTTLV
EHGFRLPSALDNRPLKFKEFEEKVNQVIYVSATPGKYEFEHQEQIVEQIIRPTGLIDPEI
FIRPTKGQIDDLLGEIRLRVERDERVLVTTLTKKMAEDLTDYFKENGVRVRYLHSDIHTM
ERMEILRDLRLGTFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRSERSLIQTIGRAA
RNAEGRVIMYADKMTDSMKKAIGETNRRRKIQMEYNRKHNITPETIRKAIRDVIEATRAA
EEKAPYVAQSKAGKLTKTELKKMIAKLEKEMKESAKHLEFERAAQLRDALIELRLQLRGE
KNIKPAIPEIEY
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
ttggaatttaagttgaagtctgactttagcccccggggcgatcagcccagggccattgaa
aaactggtggcaggcattgataagggcttgagacaccaggtactattgggggccaccggt
acagggaaaacctttaccatggccaacatcattcaagaggttaagcgccccaccttaata
ttagcacccaacaaaaccctggcagcccagctgtgtagtgagatgaaagaatttttcccg
gaaaactccgttgaatatttcgttagttactttgattactaccagcccgaggcctacatt
ccccataccgatacctatattgaaaaggattcatcactgaacgacgaaattgataaactg
cgtcactcagcaaccactgcgctgttggagcggcgggatgtaattattgtagccagtgtt
tcctgcatttacggtttaggtaacccagaaacctaccgggatctggtcctatccctgcgg
gtgggcggtacctacgaccgggatgccatcctgcgcaagctggtagatattcaatatgaa
agaaacgacattgactttagccggggtaagttccgggtacggggcgatgtcattgaaatt
tttcccgccaacgccagtgaaagggccctgcgggtggaattgtttggagatgaagtggac
cgtctgttggaaatcgatgttgtcaccggtgaaattctgggtcaacgccaacatattgct
gttttccctgccagccacttcgtaactgccgaagataacatgaaaagagccattaccacc
attgaggcagagctggagcagaggctacaggaattgcgggctgccgataaattattggaa
gcccaacgcctgcagcagcgtacccaatatgacctggaaatgatggctgaagtgggtttt
tgttcgggcattgagaactattccaggcatctcacaggacgtgcccccggagagtcaccc
tttaccctgctggacttctttcccgaagactggctgttaatcatcgatgagtcccacgtg
gcagtaccacagattggtggtatgtacgaaggggaccgttcaagaaaaacaaccctagtg
gagcacggctttcgcctgccctcagccctggataaccgacccttgaagttcaaagaattc
gaagaaaaagtcaatcaagtgatttatgtatcggccacaccgggtaaatacgaatttgaa
caccaagagcaaatcgtggaacagattattcgtcccaccggattgatagaccctgaaata
tttatcaggcccaccaaggggcaaattgatgatttattgggagaaattcgcctgcgggta
gagcgggacgaaagggtgctggtaaccaccctaacgaaaaaaatggccgaagacctcacc
gactactttaaagaaaatggcgtgcgggttcgttacctgcactcggatattcataccatg
gagcggatggaaatcctgcgggatctgcgcctgggtacctttgatgtcctggtgggcatt
aacctgctgagggagggcttagacctaccggaagtaagcctggtggccattctggatgcc
gataaagaaggctatcttcgttccgaacgctctctgatccagaccatcggccgggctgcc
cgtaatgcagagggccgggtgatcatgtatgcagacaaaatgaccgactccatgaagaaa
gccatcggagaaacaaaccgacgccgcaagattcaaatggagtataaccgtaaacataat
attaccccggaaaccattcgcaaggccatcagggatgtcattgaagccacccgggcggct
gaagaaaaagcaccctatgtggcccagagcaaggcgggtaagctaacaaaaaccgagctg
aagaagatgattgctaagctggagaaagaaatgaaagaatccgccaagcacctggaattt
gagcgggcagcccagcttagagatgccctgattgagctacggctgcagcttaggggagag
aagaacatcaagccagcaataccggagatagagtattag
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