Desmodus rotundus (common vampire bat): 112296406
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Entry
112296406 CDS
T05907
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
dro
Desmodus rotundus (common vampire bat)
Pathway
dro03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dro00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112296406 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dro03019
]
112296406 (XAB2)
03041 Spliceosome [BR:
dro03041
]
112296406 (XAB2)
Messenger RNA biogenesis [BR:
dro03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
112296406 (XAB2)
Spliceosome [BR:
dro03041
]
Complex B
Other components
Prp19-related factors
112296406 (XAB2)
Complex C
112296406 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_M
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
TPR_12
TPR_8
Suf
TPR_19
ARM_TT21
TPR_1
TPR_15
TPR_NPHP3
ARM_TT21_C
TPR_9
Motif
Other DBs
NCBI-GeneID:
112296406
NCBI-ProteinID:
XP_024407024
LinkDB
All DBs
Position
Unknown
AA seq
857 aa
AA seq
DB search
MVVMARLSRQERPDLVFDEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDANNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHARRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFSQVFDSYA
QFEESMIAAQMETASELGREEEDDVDLELRLARFEQLIXXXXXXXXXXXXEQPPSTPPPQ
IINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATRVSFKQVDDLA
SVWCECGELELRHENYEQALRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWSMLADL
EESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKWPNV
SDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPRYAKTLYLLYAQLEEEWGLARHAM
AVYERATQAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFAD
MECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIREMLRIRRSVQAT
YNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLAAEAKHDQPTRAQN
KILFVRSDASREELAELAQQANPEEIELGEDEGDEDDMDLEPNEVRLEQQSVPAAVFGSL
KEDWPPPPSPPPPLPLQ
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcgactttcgcggcaggagcggccggatcttgtctttgatgaagaa
gacctcccctatgaggaggaaattatgcgaaaccagttctccgtcaagtgctggctccgc
tacattgagttcaaacagggggccccgaagcccaggctcaatcagctgtacgagcgagcc
ctgaagctgctgccctgcagctacaagctctggtaccgctatctgaaggcgcgccgggca
caggtgaagcaccgctgcgtgaccgaccccgcctatgaggacgccaacaactgccacgag
agggcctttgtgttcatgcacaagatgccgcgtctgtggctggactattgccagttcctg
atggaccagggccgcgtcactcacgcccgccgcacattcgaccgtgccctccgtgcactg
cccatcactcagcactcgcgtatttggcctctgtacctgcgcttcctgcgctcacacccg
ctgcctgagacggccgtgcggggctacaggcgcttcctcaagctgagccctgagagcgca
gaggagtacattgagtacctcaagtccagcgaccggctggacgaggctgcgcagcgcctg
gccaccgtggtgaatgacgagcgcttcgtgtccaaggctggcaagtccaactaccagctg
tggcacgagctctgtgacctcatctcccagaacccagacaaggtgcagtcgctcaacgtg
gacgccatcatccgagggggcctcacccgcttcactgaccagctgggcaagctctggtgc
tcgctggccgactactacatccgcagcggccactttgagaaggctcgggacgtgtacgag
gaggccatccggaccgtgatgaccgtgcgggacttcagccaggtgttcgacagctatgcc
cagtttgaggagagcatgattgcagctcagatggagaccgcctccgagctggggcgggag
gaggaggacgacgtggacctggagctgcgcctggcccgctttgagcagctcatcnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnttgaacagcccccctccacccccccaccccag
attatcaacacttacacggaggccgtgcagacggtggaccccttcaaggctacgggcaag
ccccacacgctgtgggtagcgttcgccaagttttacgaggacaatgggcagctggatgac
gcccgcgtcatcctggagaaggccaccagggtgagcttcaaacaggtggacgacctggcc
agcgtgtggtgcgagtgtggcgagctggagctccggcacgagaattacgagcaggccttg
cgactgctgcggaaggcaacagcgctgcccgcccgccgggccgagtactttgatggctcg
gagcctgtgcagaaccgcgtgtacaagtccctgaaggtgtggtccatgcttgccgacctg
gaggagagccttggcaccttccagtccaccaaggccgtgtacgaccgaattctggacctg
cgcatcgccacaccccagatcgtcatcaactacgccatgttcctggaggagcacaagtac
ttcgaggagagcttcaaggcatacgagcgcggcatctcgctgttcaagtggcccaatgtg
tccgacatctggagcacctacctgaccaagttcatcgcccgctatgggggccgcaagctg
gagcgggcgcgggacctctttgagcaggcgctggacggctgccccccgagatacgctaag
accctgtacctgctgtacgcacagctggaggaggaatggggcctggcccggcacgccatg
gcggtgtacgagcgcgccacccaggccgtggagcctgcccagcagtacgacatgttcaac
atctacatcaagcgggccgcagagatctatggagtcacccacacccgaggcatctaccag
aaggccatcgaggtgctgtcggatgagcatgcccgggagatgtgcctgcggtttgcggac
atggagtgcaagctgggggagattgaccgcgcccgggccatctacagcttctgctcccag
atctgcgacccccggacaactggcgccttctggcaaacgtggaaggactttgaggtgcgg
catggcaacgaggacaccatccgggagatgctgcggatccgccggagtgtgcaggccacg
tacaacacgcaggtcaacttcatggcctcccagatgctcaaggtgtcgggcagcgccact
ggcactgtgtccgacctggcccctgggcagagtggcatggatgacatgaagctgctcgag
cagcgggcagagcagctggcagccgaggccaagcacgaccagcccacacgggcccagaac
aagatcctgttcgtgaggagcgacgcctcccgggaggagctggctgagctggcccagcag
gccaacccggaggagatcgagctgggcgaggacgagggagacgaggacgacatggacctg
gagcccaacgaggtgcggctggagcagcagagcgttccggcagctgtgtttgggagcctg
aaggaagactggccccctcccccatccccaccaccacccctgcccctgcaatga
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