Dactylosporangium roseum: Drose_12405
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Entry
Drose_12405 CDS
T08480
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dros
Dactylosporangium roseum
Brite
KEGG Orthology (KO) [BR:
dros00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dros03016
]
Drose_12405
Enzymes [BR:
dros01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Drose_12405
Transfer RNA biogenesis [BR:
dros03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Drose_12405
Prokaryotic type
tRNA splicing ligases
Drose_12405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UWZ40346
UniProt:
A0ABY5ZE85
LinkDB
All DBs
Position
complement(2531408..2532829)
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AA seq
473 aa
AA seq
DB search
MRLVQESDYRFRIDPCGGMRVPGVVFASRALLPDPAADKSLEQVANVATLPGVVEASYAM
PDMHWGYGFPIGGVAATDVDAGGVVSPGGVGFDISCGVRLLAADLDRRELTEPAVRGLMD
GLDAAIPRGMSHRAVWTLHDARQLREVLAEGARYAVQRHHGVPRDLERCEDTGAMAGADP
GQVGERAVRRGLGQVGSLGSGNHFLEVQAVDRVYDERVAGAFGLRAGQVCVMIHCGSRGL
GHQICTDYVRVMERAAGRFGITVPDRQLACTPVTSPEGRAYLGAMAAAANYARANRQLLA
EAAGHVFDRITGRELALVYDISHNLAKLETHEVAGAARRLCVHRKGATRALPPGHPDLPA
DLHDTGQPVLIPGTMGTASYVLTGRAGGPAFASTCHGAGRALSRHQAAKVVRGQELRRRL
EAGGIAVRGASWRGLAEETPEAYKDIDAVVDAAQGAGLCARVARLVPIGVVKG
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
gtgaggctggtgcaggagtccgactaccggttccgcatcgatccgtgcggcgggatgcgg
gtgccgggcgtggtgttcgcgtcgcgggccctcctgcccgaccctgccgccgacaagtcc
ctcgagcaggtggccaacgtcgcgacgctgcccggggtggtcgaggcgtcgtacgccatg
ccggacatgcactgggggtacgggttcccgatcggcggggtcgccgccaccgacgtcgac
gccggcggggtggtctcccccggcggggtcgggttcgacatctcctgcggggtccggctg
ctcgccgccgacctcgaccggcgggagctcaccgagccggcggtgcgggggctgatggac
gggctcgacgcggcgatcccccgcggcatgagccaccgcgcggtgtggacgctgcacgac
gcccggcagcttcgggaggtcctggcagagggcgcccggtacgctgtacagcggcatcac
ggggtaccacgggatctcgaacgctgcgaggacaccggcgcgatggcgggcgccgacccc
gggcaggtcggcgagcgggcggtgcggcgcgggctgggccaggtgggcagcctcgggtcg
ggcaaccacttcctggaggtccaggccgtcgaccgggtgtacgacgagcgggtggcgggc
gcgttcgggctgcgggccggccaggtgtgcgtgatgatccactgcgggtcgcgcgggctc
ggtcaccagatctgcaccgactacgtgcgggtcatggagcgcgccgccggcaggttcggc
atcacggtgcccgaccggcagctcgcgtgcacgccggtcacgtcgccggagggccgggcg
tacctcggggcgatggcggcggcggccaactacgctcgcgccaaccggcagctcctcgcc
gaggcggccgggcacgtgttcgaccggatcaccgggcgggagctggcgctggtgtacgac
atctcgcacaacctcgccaagctcgagacgcacgaggtcgccggtgcggcgcggcggctg
tgcgtgcaccgtaagggcgccacccgggcgctgccgccgggccatccggacctgccggcg
gacctgcacgacaccgggcagccggtgctcatcccgggcaccatgggcaccgcgtcctac
gtgctcaccggccgggcgggcgggccggcgttcgcgtcgacgtgccacggcgccggccgt
gcgctcagccgccaccaggcggccaaggtggtgcgcggccaggagctccgccggcgcctg
gaggccggcggcatcgcggtgcgcggtgcgtcgtggcgcggcctggccgaggagaccccg
gaggcgtacaaggacatcgacgccgtcgtggacgcggcgcagggtgccgggctgtgcgcg
cgggtcgcgcggctggtgccgatcggcgtggtcaagggatag
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