Dactylosporangium roseum: Drose_33590
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Entry
Drose_33590 CDS
T08480
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dros
Dactylosporangium roseum
Pathway
dros03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dros00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Drose_33590 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dros03400
]
Drose_33590 (mfd)
Enzymes [BR:
dros01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Drose_33590 (mfd)
DNA repair and recombination proteins [BR:
dros03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Drose_33590 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
AAA_22
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
UWZ35965
LinkDB
All DBs
Position
complement(7217972..7221568)
Genome browser
AA seq
1198 aa
AA seq
DB search
MKLAGLTAAALADPGLARARDLARAWRSGQHADQVDLTGPPALRALVAAAVAAERPVLAV
TATGREAEDLAGALGCLLDPGEVAVYPSWETLPHERLSPRSDTVGKRLAVLRRLAHPTAA
APCPRVVVAPVRSVLQPQLKGLGDLEPIELRPGVSADLEELVVRLAELAYARVDLVTKRG
EFAVRGGILDVFPPTEEHPLRVEFWGDEVEEIRSFAVADQRTIEKVEQMWAPPCRELLLT
DEVRSRAAELSTDHPQLAEMLDKLAAGIPVEGMESLAPALLGGTDSLELVLHTMPEGTHV
LLCDPERIRTRAHDLVRTSDEFLEASWAAAAVGGKAPIDLGAAAFRHLGDVRAAAASLGQ
PWWSLSPFAAAEDTVREVEPWRLGEEDESTTVTDDAITISLAAQPVPLYHGETARVVDDL
KRLSGDGWRIALVFEGSGPAQRAAEVLRAADLGVTLVETVDTPPRTGVVTITTGSLGNGF
LDEAARLAVVTGTDISGGRGASTKDMRKMPSRRRNQIDPLELRTGDFVVHEQHGIGRYVE
MVQRTVNGADREYLVIEYAPSKRGQPGDRLFVPTDQLDQLSRYVGGEAPTLHKMGGSDWQ
KAKSRARKAVREIAAQLIQLYAVRQNSQGHAFGPDTPWQRELEDAFPYHETPDQLAAIEE
VKGDMEKPTPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHFNTFSE
RVAQFPVEVRQLSRFQTPTETKLTLEKVSEGGVDIVIGTHRLLQTATRFKQLGLVIVDEE
QRFGVEHKEFLKQLRASVDVLTMSATPIPRTLEMAITGIREMSTIATPPEERHPVLTYVG
AQDDKQVAAAIHRELLRDGQVFYLHNRVESIERAARRLRELVPEARVAVAHGQMGEEALE
KIMVGFWEKEYDVLVCTTIVESGIDIPNANTLIVERADLLGLAQLHQIRGRVGRGRERAY
AYFLYPPDKPLTEHAHERLATIAQHTELGAGMYVAMKDLEIRGAGNLLGGEQSGHIEGVG
FDLYVRMVGEAVQQFKGERPEEEEVDVKIDLPVDAHLPLEYIAAERLRLEIYRKIAGAKD
DAALDEIVAEMKDRYGEPPLPVANLLAVARFRFLARAHGLTDVSLQGKHIRFAQVRLPDS
KQMRLKRLYPEAVYKAAAETVSLPRPSTRRVGGEPMRDTQLLDWAAELLTTVLGPRAA
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcgccggtctcactgccgccgcactcgccgacccgggcctggcccgggcccgt
gacctcgcccgcgcttggcgttccggacagcacgccgaccaggtcgacctgaccgggccg
ccggcgctgcgcgcgctcgtcgccgccgccgtcgccgccgagcggccggtcctcgcggtg
acggccaccggccgggaggccgaggacctggccggcgccctcggctgcctgctggacccc
ggcgaggtggcggtctacccgtcctgggagaccctgccgcacgagcggctgtcaccgcgc
tccgacacggtcggcaaacggctcgccgtgctgcgccgcctcgcccacccgaccgccgcc
gcgccgtgcccgcgggtcgtcgtggcgccggtgcgctcggtgctccaaccccagctcaag
ggcctcggtgaccttgagccgatcgagctgcgcccgggcgtgtcggccgatctggaggag
ctcgtcgtccggctggccgagctggcctatgcgcgcgtcgacctggtcaccaagcggggc
gagttcgcggtccgcggcggcatcctcgacgtcttcccgccgaccgaggagcacccgctg
cgcgtcgagttctggggcgacgaggtcgaggagatccgctcgttcgcggtcgccgaccag
cgcacgatcgagaaggtcgagcagatgtgggcgccgccgtgccgtgagctgctgctgacc
gacgaggtccggtcccgcgcggccgagctgtccaccgaccacccgcagctcgccgagatg
ctcgacaagctcgccgcgggcatccccgtggagggcatggagtcgctggcgcccgccctg
ctcggcggcaccgactccctcgagctggtgctgcacaccatgccggagggcacccacgtg
ctgctgtgcgacccggagcggatccgcacccgggcgcacgacctcgtccgcaccagcgac
gagttcctggaggcgagctgggcggcggcggccgtgggcggcaaggcgccgatcgacctc
ggcgcggcggcgttccgccacctgggcgacgtccgcgcggccgcggcctcgctggggcag
ccgtggtggtcgctcagcccgttcgccgccgcggaggacaccgtccgcgaggtcgagccg
tggcggctcggcgaggaggacgagagcaccaccgtcaccgacgacgccatcaccatctcg
ctggccgcccagccggtgccgctctaccacggcgagaccgcgcgggtcgtcgacgacctc
aagcggctctccggcgacggctggcggatcgcgctcgtcttcgagggctccggtccggcc
cagcgcgccgccgaggtcctgcgcgccgccgacctcggcgtgacgctggtggagaccgtc
gacaccccgccgcgcaccggcgtcgtcaccatcaccaccggctccctcggcaacggcttc
ctggacgaggcggcccgcctggcggtcgtcaccggcaccgacatctccggcggccgtggc
gcgtccaccaaggacatgcgcaagatgccgagccggcgccgcaaccagatcgacccgctc
gagctgcgcaccggcgacttcgtggtgcacgagcagcacggcatcggccgctacgtcgag
atggtgcagcgcaccgtcaacggcgccgaccgggaatacctcgtgatcgaatacgcgccg
tcgaagcgcggccagcccggcgaccggctgttcgtccccaccgaccagctcgaccagctc
tcccgctacgtcggcggcgaggcgcccaccctgcacaagatgggcggatccgactggcag
aaggccaagtcccgcgcccgcaaggcggtccgcgagatcgccgcgcagctcatccagctc
tatgcggtgcgacagaattcgcagggccacgccttcggccccgacacgccctggcagcgt
gagctggaggacgcgttcccctaccacgagacccccgaccagctcgccgccatcgaagag
gtcaagggcgacatggagaagccgaccccgatggaccggctgatctgcggcgacgtcggc
tacggcaagaccgagatcgccgtgcgggccgcgttcaaggccgtgcaggacggcaagcag
gtcgccgtgctggtgcccaccaccctgctcgcccagcagcacttcaacaccttctccgag
cgggtggcccagttccccgtcgaggtccgtcagttgtcgcgcttccagaccccgaccgag
acgaagctgaccctggagaaggtgtccgagggcggcgtggacatcgtcatcggcacccac
cggctgctgcagaccgcgacccggttcaagcagctcggcctggtgatcgtcgacgaggag
cagcgcttcggcgtcgagcacaaggagttcctcaagcagttgcgcgcctccgtcgacgtg
ctgaccatgtcggccacgccgatcccgcgcaccctggagatggcgatcaccggcatccgc
gagatgtcgaccatcgcgaccccgccggaggagcgccatccggtgctcacctatgtcggt
gcgcaggacgacaagcaggtggccgcggcgatccaccgcgagctgctgcgcgacggccag
gtcttctacctgcacaaccgggtcgagtccatcgagcgtgccgcccgccggctgcgcgag
ctggtccccgaggcgcgggtcgcggtcgcgcacggccagatgggcgaagaggcgctggag
aagatcatggtcggcttctgggagaaggagtacgacgtcctcgtctgcaccacgatcgtc
gagagcggcatcgacatccccaacgccaacaccctcatcgtggagcgcgccgacctgctc
ggcctcgcccagttgcaccagatccgcggccgggtcggccggggccgcgagcgggcctac
gcctacttcctctacccgccggacaagccgctgaccgagcacgcgcacgagcggctcgcc
acgatcgcccagcacaccgagctcggcgcgggcatgtatgtggcgatgaaggacctggag
atccgcggcgctggcaacctgctcggcggcgagcagtccgggcacatcgagggcgtcggc
ttcgatctgtacgtgcggatggtcggcgaggcggtccagcagttcaagggtgagcggccg
gaagaggaggaggtcgacgtcaagatcgacctgccggtcgacgcgcacctgccgctggag
tacatcgccgcggagcggctgcgcctggagatctaccgcaagatcgccggggcgaaggac
gacgccgcgctcgacgagatcgtcgccgagatgaaggaccgctacggcgagcccccgctc
ccggtggccaacctgctggcggtcgcgcggttccggttcctcgcacgggcacacgggctg
accgacgtctcgttgcagggcaagcacatccggttcgcccaggtgcggctacccgactcc
aagcagatgcgcctcaagcggctctacccggaggcggtctacaaggcggctgccgagacg
gtctcgctgccccgcccgtcgacccgccgggtcggcggtgaaccgatgcgcgacacccaa
ctgctcgactgggccgccgagctgctgacgaccgttctcggaccgcgagccgcatga
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