Devosia rhodophyticola: PSQ90_15595
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Entry
PSQ90_15595 CDS
T09920
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
drp
Devosia rhodophyticola
Pathway
drp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
drp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSQ90_15595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
drp03019
]
PSQ90_15595
03009 Ribosome biogenesis [BR:
drp03009
]
PSQ90_15595
Enzymes [BR:
drp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PSQ90_15595
Messenger RNA biogenesis [BR:
drp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PSQ90_15595
Ribosome biogenesis [BR:
drp03009
]
Prokaryotic type
rRNA processing factors
PSQ90_15595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WDR05662
UniProt:
A0ABY7YWT0
LinkDB
All DBs
Position
complement(3171882..3174599)
Genome browser
AA seq
905 aa
AA seq
DB search
MATKRMLVDAIHPEETRIVVTSGNRLEEFDFESAQRRQLRGNIYLAKVTRVEPSLQAAFV
EYGGNRHGFLAFSEIHPDYYQIPVADREALLRDEEDDHKQDDADDHVSLPEGVTEPDAET
DTQDMEGTGHIEEAPADSEPVESIGGADALEEVPERRRSVTKRHYKIQEVIKRRQVMLVQ
VVKEERGNKGAALTSYLSLAGRYSVLMPNTARGGGISRKITNAADRKRLKEITSDLEVPQ
GMGVILRTAGASRTKAEVKRDFEYLMRLWENVRSLTLKSQAPCLVYEEGSLIKRTIRDLY
NKDIDEVFVAGDDAYREAKDFMRMIMPSHAKNVQLYKDDQPLFSKYTIEQQLDSMFSPQV
TLPSGGYLVINPTEALVSIDVNSGRSTKEHNIEDTALQTNLEAADEVARQLRLRDLAGLV
VIDFIDMVENRSNRAVERRLKEALKDDRARIQVGRISHFGLMEMSRQRIRFGVVESSTHK
CPICDGTGLVRSVESLALMVMRNVEDHVLRRPGQSINVRVPVDVALYILNFKRDSLTALE
DKYQLSITVTADGKLTGSQFGIEKGEARANAHLEQRAAQHVRVDSAVIDDDAADQAAADE
AEAEEETPAAEAGDGETGRSGRRRRRRRRGGERNDENGRQGATQPAVTQAEASTDDEAAP
ADSAENGEEPAADGDDDGPRKRRRRGRRGGRRNRRDEEGAEISATAGEQADAAPAETPAP
EVAQVEQPADVAETPAVVSEAAPADVPAAEAPGDAEVAAAAEKPKKVRRPRKTAAQKAAE
AADAAAATAVEGAAPEAEPAPEKPKRKPRVRKPKVTAETEVAAAEATPMPTVEAPAEKPA
PEPVDAVAAEAEAAPVDDKPRRARKELPADGIVVSSSSAAAEAEGASEPEKKKKGGWWQR
RLGLG
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atggctaccaagagaatgctggtggatgccatccaccccgaagaaacccggattgtcgtc
acatccggtaaccggctggaggaattcgattttgaatcggcgcaacgtcgccagttacga
ggcaatatttacctcgccaaggtcacccgcgtagaaccttcactacaggctgctttcgtt
gaatatggcggcaatcgccatgggtttctcgctttttccgaaatccaccccgactattac
caaattccggttgctgaccgcgaagcgcttttgcgcgacgaggaagatgaccataagcaa
gatgatgccgatgatcacgtctcgctgcccgagggcgtaaccgagccggacgccgaaacc
gacacccaggacatggaaggcactggccacattgaggaagcacccgctgactcagaacca
gtggaatccatcggtggtgctgacgcgctcgaagaagtccccgagcgccgccgttcggtt
accaagcgtcactacaaaatccaggaagtcatcaagcgccgccaggtcatgctggtgcag
gtggtcaaggaagagcgcggcaacaagggcgcagcactaacctcttatctgtcgcttgcc
ggtcgctactcagtgctgatgccaaataccgcgcggggcggcggtatctcgcgcaagatc
accaacgcggctgaccgcaagcgcctcaaggaaatcacctcagatctggaagtaccacag
ggcatgggcgtcattctgcgcacggcaggggccagtcgcaccaaggccgaggtcaaacgc
gacttcgaatatctgatgcgtctttgggagaatgtgcgctcgctgaccctcaagagccag
gcaccctgccttgtttacgaggaaggctcgctgatcaagcgcaccattcgcgacctctac
aacaaggacatcgacgaagttttcgtggcaggcgacgacgcctaccgcgaagccaaggac
ttcatgcggatgatcatgccgagccacgccaagaacgtgcagctctacaaggatgatcag
ccgctattctccaaatacaccatcgaacagcagctggactcgatgttctcgcctcaggtc
accctgccctctggcggctatctggtgattaaccccaccgaggcactggtctcaatcgac
gtcaactcgggacgctccaccaaggagcacaatatcgaggacaccgcgctccagaccaat
ctggaagctgccgacgaagttgcccgccagttgcgcctgcgcgatctggccggtctcgtt
gtaatcgactttatcgacatggttgaaaaccgctcgaatcgcgcggtggaacgacgcctc
aaggaagcgctcaaggatgatcgcgcccgcattcaggttggccgcatcagccatttcggc
ctgatggaaatgagccggcagcgcattcgtttcggcgttgtcgaaagctcgacccacaag
tgcccgatctgcgacggcaccggcctggtccgttcggtcgagagcctcgccttgatggtt
atgcgcaatgtggaagatcacgtgctgcgccgccccggccagtcgatcaatgtgcgcgtc
ccggtcgacgtggcgctctatattctcaacttcaagcgcgacagcctgacagcgctcgag
gacaaatatcaattgtcgatcaccgtaacagccgacgggaaactgaccggcagtcagttc
ggtattgaaaaaggcgaggctcgcgccaacgcgcaccttgagcagcgcgcagcccagcac
gtccgggtcgacagcgccgtcattgacgacgatgctgctgaccaagcagccgccgatgag
gctgaagcagaagaagaaacacctgccgccgaggctggcgatggtgaaacaggccgtagt
ggtcgtcgccgtcgtcgtcgccgtcgtggcggtgagcgcaatgacgaaaatggacgtcag
ggcgcaacccaaccggcagtcacccaagcagaagcatcgaccgacgatgaggccgctccg
gcagactccgccgagaatggcgaagaacccgccgctgatggcgacgacgacggcccccgg
aagcgccgccgccgcggccgtcgtggtggtcgccgcaatcgtcgtgatgaggaaggcgca
gaaatttccgcaactgcaggcgagcaggcagatgccgccccggccgaaacgcccgcacct
gaggttgctcaggttgagcaacccgccgacgtggcagaaacgccagccgtcgtcagcgag
gccgcgccagctgacgttcccgccgccgaagcgccaggcgatgctgaagtagcggctgca
gcggaaaaacccaaaaaggttcgtcgtccacgcaagaccgcggctcaaaaagccgctgaa
gctgccgatgccgccgccgcaacagcggttgagggagcagcaccggaagccgaacccgcg
cctgaaaagccaaaacgcaaaccccgcgtgcgcaagccaaaagttacggccgaaaccgag
gttgcagcagcagaggcaacaccgatgcccacagtagaggcaccggctgaaaagcctgcc
cctgagccggtggacgcggtagcagcagaagccgaagcggcgcctgttgatgataagccg
cgtcgcgccaggaaagaactcccggccgatggcatcgtggtctcatccagctctgccgct
gctgaagctgaaggcgcgtcggaacccgagaaaaagaaaaagggcggatggtggcaacgc
cgcctcggcctcggctag
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