Dehalobacter restrictus: DEHRE_05760
Help
Entry
DEHRE_05760 CDS
T02996
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
drs
Dehalobacter restrictus
Pathway
drs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
drs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DEHRE_05760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
drs03019
]
DEHRE_05760
Messenger RNA biogenesis [BR:
drs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DEHRE_05760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AHF09654
UniProt:
A0ABN4BR47
LinkDB
All DBs
Position
1151067..1152731
Genome browser
AA seq
554 aa
AA seq
DB search
MPKEHKLQIIPLGGLGEIGKNMTLIKYDNQMIMIDAGMAFPEDDMPGIDLVIPDYSYVIE
NKDMLLGIMVTHGHEDHIGTFPYLLKDIDAPVFAPKLTLGLIQAKLKECNVNRFKSTVVN
PGESIKLGVFKIDFIRVNHSIPDSVSLAIHTPLGVIVHTGDFKLDHTPVTSEILDIYKFS
ELGEKGVLCLMSDSTNVERPGFTMSERVVGQMFDDVFRTAKERIILASFASNIHRVQQVI
TAAFKTNRKVAIVGRSMQNYASIAAEYGYLIIPEGTLVDVEEVLQLPPNQVCIITTGSQG
EPMSALSRMASSDHKQVEILPGDTVIISASPIPGNEKSVARTIDQLFKLGANVIHEQASG
VHVSGHGSQEELKMMLNMVRPQYFVPVHGEYRMLIKHGQIAEQLGISHKNIFIAENGSVI
EFTRNGAGIAGKVPSGRILVDGLGVGDVGNIVLRDRKQLSQDGILIVVIALSRSTNEIVA
GPDIVTRGFVYVRESETMLDEAKEKIRQTTERCIENGIIEWVTLKNQIKDVLGKHLYEKT
KRKPVILPIIQEVK
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
ttgccaaaagaacacaaactgcaaattatccctttaggcggattgggtgaaatcgggaaa
aacatgacgctgataaagtatgacaaccagatgatcatgattgatgccggtatggctttc
cctgaagatgacatgcccggaattgatctggtcatccctgactattcctatgtcatcgaa
aacaaggacatgctgctcgggattatggtgacccatggtcatgaagatcatatcggcaca
ttcccctatcttctgaaggacatagacgcgcctgtatttgcgccaaaacttaccttggga
ctgatccaggccaaattaaaggagtgcaatgtcaaccggtttaaatcgactgtcgtcaat
cctggagagagtatcaagcttggcgtttttaaaattgattttatccgggtcaaccacagc
atacctgattctgtgagtctggctatccatacacccctcggtgtgatcgtccataccgga
gattttaaactggatcatacccccgttacatcggagatcctagatatttataaattctcc
gaattgggtgaaaaaggcgtactctgcttaatgtccgacagcacgaatgtagaaaggcct
ggttttacgatgtcggagagagtggtcggacagatgttcgacgatgtattccgcaccgcc
aaggaaagaatcattttagccagctttgcttcgaatatccatcgcgtgcagcaggtcatc
accgctgctttcaaaacgaacaggaaggttgccattgtcggcaggagcatgcagaattac
gcctcaatcgctgctgaatatggctatctgatcattccagaaggaacgctggtcgatgta
gaagaggttctccagctgccaccgaatcaggtctgtattattacaacagggagtcagggg
gaaccgatgtcggcactttcccgcatggcttccagcgaccataaacaggtcgagatcctg
ccaggtgatacggtgattatctccgcgagtccgattccgggaaatgagaaatcggtggcc
cgaaccatcgatcagttgtttaaactcggcgccaatgtgatccacgaacaagcatcaggc
gtccatgtttccggtcatggcagtcaggaagaattaaagatgatgctgaatatggtaaga
ccgcagtattttgtgcctgtgcacggtgagtaccgcatgctgattaagcatggccagatt
gccgaacagcttggaatttcgcataaaaatatttttattgccgaaaatggaagtgtcatt
gagttcaccagaaatggagcaggtatcgccgggaaagtgccatccggcagaattttagtg
gacgggcttggtgtaggggacgtcggcaatattgtgctgcgcgaccgcaaacagctgtct
caggacggtattttaatcgtagttattgcgctgagccgttccaccaatgaaattgttgcc
gggcctgatattgtgaccaggggattcgtctatgtcagagaatccgagacaatgctggat
gaggctaaagagaaaatcagacagaccaccgaacgctgcatcgagaacggtattattgaa
tgggtcacactcaaaaatcagattaaagacgttctaggcaagcatctgtatgaaaaaacg
aaaagaaaaccggtcatcctgccaatcattcaggaagtgaaataa
DBGET
integrated database retrieval system
