Dehalobacter restrictus: DEHRE_12030
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Entry
DEHRE_12030 CDS
T02996
Name
(GenBank) RNA polymerase sigma-54 subunit RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
drs
Dehalobacter restrictus
Pathway
drs02020
Two-component system
drs02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
drs00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
DEHRE_12030
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DEHRE_12030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
drs03021
]
DEHRE_12030
Transcription machinery [BR:
drs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DEHRE_12030
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
2Fe-2S_thioredx
HTH_23
TMA17_helical
HTH_Tnp_ISL3
Formyl_trans_C_2
HTH_3
Focal_AT
HTH_Crp_2
HTH_IclR
LacI
Motif
Other DBs
NCBI-ProteinID:
AHF10705
UniProt:
A0ABM5P7V5
LinkDB
All DBs
Position
complement(2380736..2382121)
Genome browser
AA seq
461 aa
AA seq
DB search
MRQIRQDIFLEQQQRLFMTTELRQAISVLQMSTLELSEYITKKIEENPFLDEDEPVAENN
EVVSKTATRVNMDDLIEHFSSDSNMGHIWNEKNENDTGYEQYLSDRPSLYEQLELQLNLE
IKNPADIIIGNFLIGSIDRNGYFTTELEYVSQKLNVAVERVEEVLKVIHTFYPTGVGARN
LQECMLLQMRANGKDSELAEQVIQNYFQELADKKIMKIANTLSVSTKQVQEVYDLIRMLD
PKPGLQFGAERNPFIWPDVTIMRDQNDYMVIVNDFDFNYLRINQTYVDILRNSNALSDDV
KKYLEEKFDSALGLIRGIEQRRLNIYKVVQSIVDIQREFFDNGIEYLKPLTMSQVADLVG
IHESTVSRVTCNKYVQTPRGLFALKYFFNSGVGSYDCDKISSKSVKHLIQDIINKEDPNQ
PLSDQDIMMMLVNKGMRISRRTVNKYRQSMGIPTNLHRKRY
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgaggcagatacgccaagatatatttcttgaacagcaacagagattgttcatgaccact
gaactgcgtcaggcaatttctgtattgcagatgtcgactctggaactaagcgagtatatc
acaaaaaaaatagaagagaatccttttctggacgaagatgaacccgttgctgaaaacaat
gaggttgtcagcaaaactgcaacccgggttaatatggacgacctgattgaacatttcagc
agcgacagcaatatgggtcatatctggaatgagaagaatgaaaatgacaccggatacgaa
caatatctgtctgatcggccaagtttatatgagcagcttgaattacaattgaatttagag
atcaaaaatcctgcggatattatcattggaaactttctgataggaagtattgatcggaac
ggctattttacaacagaactggaatatgtcagccaaaaattgaatgttgccgttgagaga
gtggaagaggtcctaaaggtcattcatactttctatcctaccggcgtaggtgcccgaaat
cttcaggaatgcatgcttctgcaaatgagagcaaacggcaaggatagtgagcttgcggaa
caggttattcaaaactacttccaggagcttgccgacaaaaaaataatgaaaatagccaat
accctctccgtgtctacgaagcaggtccaagaagtctatgatcttatcaggatgcttgat
cccaaacccggactgcagtttggcgctgaaagaaatccttttatctggcctgatgttacg
attatgagagaccagaacgattatatggttattgtaaacgactttgattttaactatttg
agaatcaatcagacgtatgtggatattctccgtaattcgaatgcgttatccgatgatgta
aaaaaatatcttgaagaaaagtttgattccgccttaggactcatccgcggaattgaacaa
agaagactaaacatttacaaagttgtgcaaagcattgttgatattcaaagagaatttttt
gacaatggcattgaatatctgaagcccttgaccatgagtcaggttgcggacctggtcggc
atccatgaatctacggtaagccgggtcacctgcaacaaatacgtccagacgccgcgcgga
ctgtttgctttgaagtatttctttaactccggtgtgggttcttatgactgcgacaaaata
agttccaaaagtgtcaaacacttgatccaggatattattaataaagaagacccgaaccaa
ccactgagcgaccaggatattatgatgatgcttgtgaacaaagggatgaggatctcccgg
agaactgtcaacaagtaccgtcagagtatggggatacctacaaatttacaccgtaaaaga
tattaa
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