Desulfohalobium retbaense: Dret_0042
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Entry
Dret_0042 CDS
T00989
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
drt
Desulfohalobium retbaense
Pathway
drt00061
Fatty acid biosynthesis
drt00071
Fatty acid degradation
drt01100
Metabolic pathways
drt01212
Fatty acid metabolism
drt02024
Quorum sensing
drt04146
Peroxisome
Module
drt_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
drt00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Dret_0042
00071 Fatty acid degradation
Dret_0042
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Dret_0042
09145 Cellular community - prokaryotes
02024 Quorum sensing
Dret_0042
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
drt01004
]
Dret_0042
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
drt04147
]
Dret_0042
Enzymes [BR:
drt01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Dret_0042
Lipid biosynthesis proteins [BR:
drt01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Dret_0042
Exosome [BR:
drt04147
]
Exosomal proteins
Exosomal proteins of breast milk
Dret_0042
Exosomal proteins of breast cancer cells
Dret_0042
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
AMP-binding_C
Motif
Other DBs
NCBI-ProteinID:
ACV67344
UniProt:
C8WZ69
LinkDB
All DBs
Position
54631..56523
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AA seq
630 aa
AA seq
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MTNPAPRPTLFDAFLESYKNYKHQTAFIYRVGDEQFEVSYAKLFEDALLLAKAFRGQGIV
KGDKVFLLSDNRYAWIVTDLALMALGAVSVPRGSDTPSSELAYILDHSECAYLILETEGL
FNQHRELIEQRALQGVFVIASEHPAEPGMLTYSQLLANRSLSLEDLRQLMQVKRQVGGDD
LVTIIYTSGTTGTPKGVKLTHANIMHNVQNLPDLIRLTSEDRWLSILPTWHIFERTVEYV
ALSRGSCIVYSSIRTFAADLERFKPTLVATVPRIWESLYGKVNAALKKESPRKARLFQFL
VSVSSSFRLNSRRISGRLPRFEHEPWWRVLPRKARALACVVALAPLYAVARAKLAPVKKK
FGGRLRLAISGGGSLPPFLDEWIDAIGIRITNAYGMTECSPGIAGRGLDCRTFGTLGPPF
PYTEVRIAGQDDIEVPTGTEGEIQVRGPQVFHGYYHNNEANAESFTPDGFFRTGDLGKKT
LNGELVITGRAKEIIVLASGENIDPTNIEATISTFPFVQDAVLVGQDKKGLGALIVPDLE
KLRQYVAEQYNHVVNEAGDVLQDKQIVESLKREMNKLLKPKRGFKPYEKLHSIHFLNREF
KLGEELTNTLKKKRHVIEQKYQDIINRLLK
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgaccaatccggcgccccggcccaccctttttgatgcttttttggaaagctacaagaat
tataagcaccagacggcgtttatctaccgggtgggcgacgagcaattcgaggtttcgtat
gcaaaactcttcgaggacgcgctgctcttggccaaggccttccggggacagggaatcgtc
aaaggggacaaggtctttctgctctcggacaaccggtacgcctggatcgtcaccgacctg
gccctgatggccctcggcgcggtcagtgtgccgcgcggcagcgacaccccgtcgtcagaa
ctcgcctatatcctggaccattcggaatgcgcctatctgatcctggaaaccgaggggctt
ttcaaccagcaccgggaactcatcgagcagcgcgccttgcaaggggttttcgtcatcgcc
tctgaacaccctgcggaaccagggatgctgacctattcccagctcctggccaaccggagt
ttgagccttgaggatttgcgacagctcatgcaggtcaagcgtcaggtcgggggcgacgat
ctggtgaccatcatctacacctcgggcaccaccgggactcccaagggggtcaagctgacc
cacgccaatatcatgcacaatgtgcagaatctgcccgacctcatccggctcaccagcgag
gatcgctggctgtccatcttgcccacctggcatattttcgagcggaccgtggagtatgtg
gccctgtcgcgggggtcgtgcatcgtttactcctccatccggacctttgccgcagacctg
gagcggttcaagccgaccctggtggccacagtgccgcgtatctgggagtcgctctacggc
aaggtcaatgccgcactgaaaaaggaaagccccagaaaagcccggctctttcagtttttg
gtgagtgtttcgtcctcctttcggctcaatagccggcgtatttcgggacggttgccgcgc
tttgagcatgagccgtggtggcgggtgctcccacgcaaggcccgcgccctggcttgcgtt
gtcgctttggcgcccctgtatgccgtggcccgggccaagttggccccggtgaaaaagaag
ttcggtggccggttgcgcttggctatcagtggcgggggaagcctgccgccgtttcttgac
gaatggattgatgccatcgggatacggatcaccaacgcctacgggatgaccgaatgctcg
ccgggcattgccggtcgcggtctggactgccggacattcggcaccctggggccgcccttt
ccctacaccgaagtccgcatcgcggggcaggacgacattgaggtcccgaccggaacggaa
ggggagatccaggtccgcggcccccaggttttccacggctattaccacaacaatgaggcc
aatgccgaatccttcaccccggacgggtttttccgcaccggtgacctgggcaaaaagacc
ctcaatggggaactggtcatcaccggccgggccaaggagatcattgtcctggccagcggc
gaaaatatcgatcccacgaatattgaggccaccatttcgacctttccctttgtccaggac
gccgttctcgtgggacaagacaaaaaaggcctcggcgccttgattgttccggatttggaa
aagctccggcagtatgtggctgagcagtacaaccatgtggtgaacgaggccggggatgtt
ctccaggacaagcagatcgtggaaagtctcaagcgggaaatgaacaagctgttgaagccg
aagcggggctttaagccttatgaaaagctccattcgatccattttttgaacagggaattc
aagcttggcgaggaattgaccaacacgctgaagaaaaaacggcacgtcattgagcagaag
tatcaggatattatcaatcggctgctgaagtag
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