Desulfohalobium retbaense: Dret_0087
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Entry
Dret_0087 CDS
T00989
Name
(GenBank) Lytic transglycosylase catalytic
KO
K08307
peptidoglycan lytic transglycosylase D [EC:
4.2.2.29
]
Organism
drt
Desulfohalobium retbaense
Brite
KEGG Orthology (KO) [BR:
drt00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
drt01011
]
Dret_0087
Enzymes [BR:
drt01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
Dret_0087
Peptidoglycan biosynthesis and degradation proteins [BR:
drt01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
Dret_0087
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LysM
SLT
LysM3_LYK4_5
LysM1_NFP_LYK
LysM3_NFP
LysM2_CERK1_LYK3_4_5
LysM_RLK
LysM_OapA
SLT_2
GEMIN8
Motif
Other DBs
NCBI-ProteinID:
ACV67389
UniProt:
C8WZB4
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Position
117707..119569
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AA seq
620 aa
AA seq
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MPYVFPRAFVLVLLLAVGCAPLTNSPQSQHTGKMQNATPENTAVNASCPVSAAPSAVTEK
AARNASKPEQQDLAAEATGSDADLKQPLEEEVQADVSSNATDKEPALTQAEKKALESEAE
IQFDLDVRETERMQKFFRYYTHKHRKTFQRWLKRAEPYLPHIRKVITEKGLPQDLVFLPF
AESGFNPWAYSRAGAAGLWQFMPATGRHFDLRVDWWMDERRDPYASTQAAAEYLSRLYGQ
FQDWYLALAAYNAGEGNVGRALERSGCDNFYDLASSRRYLKSETRNYVPKFQAILKIVRN
LEELGFEPIDWDASPEPSQVAIKGGTDLMGLADATGMSWSEFRKANPKFRRTVSPPDASY
QVQIPAPKVAQAKAYLDGPRAQKMAGGKRYRVRSGDSWWRIARRFDVPLTALMRLNNTRS
KMLHPGDSVLIPVSGEAARARVAAQDGEYVVQRGDSLWELARRMDTTVTKLRRANNLQNT
TLRVGQRLTIPGGSQKAKTRQIAQRRSNYTVKKGDTLWELSRRFGLSLNTLVQANGIGRS
SALQVGQKLYIPDRGRTTQVAKAREKAAHQRLVRYTVRQGDNLWTIARRFGVSADALQDW
NNLGKNELIHPGDNLRVYIQ
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgccatatgtattcccccgtgcctttgtcctcgtgttgttgctggccgttggctgcgca
ccgctgaccaactccccgcagtcgcagcacactgggaaaatgcaaaatgccactccggag
aacacagcggtcaatgcgagttgccctgtgagcgctgcgccgtcagccgtgactgagaaa
gcggcaagaaatgcgtcgaagcctgagcagcaggatcttgcggctgaggctaccggaagc
gatgccgatctgaaacagcctctggaagaagaggtccaggcggatgtctccagcaacgcc
actgacaaagagcctgcgttgacccaggccgaaaaaaaggccctggagtcggaagcggaa
atccagttcgacctcgacgttcgggaaaccgaacggatgcagaaatttttccgctattat
acccataaacaccgcaagacctttcagcgttggctcaagcgggccgaaccgtatctgccg
cacatccggaaggtgatcacggaaaaggggctgccgcaggacctggttttcctgcccttt
gccgagagtggcttcaacccgtgggcctattcccgggccggtgcggccgggttgtggcaa
ttcatgcccgccaccggacgccatttcgatctccgggttgactggtggatggatgagcgc
cgggatccctacgcctctacccaggcggcggcggaatacctctcccgcctctacggtcaa
ttccaggactggtacctggcccttgccgcctacaacgccggtgaaggcaatgttggtcgg
gccctggagcgcagcggctgcgacaatttctacgatctcgcctcgagcagacggtacctc
aaatccgagacccgcaattatgtgcccaaatttcaagctatcctcaagatcgttcgcaat
ctcgaggaactcggcttcgagcccatcgactgggacgcgtctcccgagccctcgcaggtg
gccattaaagggggcactgatctcatgggcttggccgatgccacgggtatgagctggtcc
gaatttcggaaagccaacccgaaattccggcgtacggtcagccccccggacgcgagctat
caggtgcagatcccggcccccaaggtggcgcaggccaaggcctatctcgacggcccccgg
gcccagaaaatggccggcggcaaacggtaccgggtgcgcagcggcgattcctggtggcgt
atcgcccgccgttttgacgtgccgctgaccgcgctgatgcgcttgaacaatacccggtcg
aagatgctccatcccggggactcggtgcttatcccggtttccggggaggcggcccgggcc
cgcgtcgcagcacaggacggggaatatgtcgtgcaacgcggtgattccctctgggagctt
gcccgccggatggacaccaccgtcaccaaattgcgccgggccaacaatttgcagaatacg
acccttcgcgtggggcagcgcctgaccattccggggggctcccagaaggccaagacccgg
cagatcgcccagcgccgctccaactatacggtcaaaaaaggcgacaccctctgggaactt
tcgcgccgtttcggcctcagcctcaatacgctggttcaggccaacggtatcggcaggtcg
agcgcgttgcaggtcgggcagaagctgtacatcccggaccgcggccggacgacgcaagtg
gccaaggcccgggagaaggccgcccatcaacggctggtccggtacacggtccgccagggc
gacaatttgtggaccattgcccgccgttttggtgtcagtgccgacgccctgcaggactgg
aacaacctgggcaagaacgaattgatccaccctggcgacaatcttcgggtctatattcaa
tag
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