Desulfohalobium retbaense: Dret_0333
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Entry
Dret_0333 CDS
T00989
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
drt
Desulfohalobium retbaense
Brite
KEGG Orthology (KO) [BR:
drt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
drt03016
]
Dret_0333
Enzymes [BR:
drt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Dret_0333
Transfer RNA biogenesis [BR:
drt03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Dret_0333
Prokaryotic type
tRNA splicing ligases
Dret_0333
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
RuvA_N
Motif
Other DBs
NCBI-ProteinID:
ACV67635
UniProt:
C8X010
LinkDB
All DBs
Position
417251..418681
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AA seq
476 aa
AA seq
DB search
MDTSLLRRINAYCWEVPQQGAMRVPGRLFGSGALIRDLDDMVLEQVSQVAALPGIVRASL
AMPDAHWGYGFPIGGVAAFDPDRGGIISVGGVGYDISCGVRTLRTGLSKEDVLSVLPELV
DLLATVIPAGVGRGGQLRLSGSELDDVLRLGARWAVAQGYGESRDLEYIEDGGCLSGANP
EVVSETAKKRQQDQVGTLGSGNHYLEVQYVDAIYDQAAAFAFGLKEGGVVVSLHCGSRAL
GHQIGTDYIQILGRAAQKRSLHLPSRDLVCAPIDSKEGRDYYQAMACGVNCALANRQVLG
HLVRQAFAEMFPLARLELLYDVSHNTCKVEDHDVDGLRKSLYVHRKGATRSFGPGRQELP
AAYRGVGQPVLIGGTMGTASYILAGTVESEAMAWGSACHGAGRAMSRKQATKRWKGKSVL
HELEHRGILVRAASQRGVAEEAPGAYKDVDEVVESTHHAGLARKVGRLRPLACIKG
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atggacacaagtcttttgcggcggatcaatgcctattgttgggaagttccccaacagggc
gccatgcgggttccagggcgtctgttcggcagcggagcccttatccgcgacctcgacgac
atggttctggagcaggtcagccaggtcgcagccctgccagggattgtccgtgcttcgctg
gccatgcccgacgcccactgggggtacggattccctatcgggggcgtggcggcctttgat
cccgaccgtggaggcattatttccgtgggcggggtggggtatgatatttcctgcggtgtg
cgcaccttgcggacaggattgtccaaagaggacgtcctttctgtcttaccggaactggtg
gatcttttggctacggtgattcctgcgggggtcggacgcggcggacagctcaggctgtcc
ggctccgaactcgacgatgtcctgcgtctgggcgcgcgctgggccgtggcccaaggatac
ggagaatcgcgggatctggaatatatcgaggatggcggttgcttgagcggggcgaatccg
gaggtggtttcagaaacggcgaaaaagcggcagcaggatcaggtcggcaccctgggctcc
ggcaaccactatctggaagtccagtatgtggatgcgatctatgaccaagcagcggccttt
gccttcgggctcaaagagggcggtgtcgtggtttcactccattgcggctcacgggctctg
gggcaccagatcggcaccgattatatccaaatcctggggcgggcggcgcaaaaacgcagc
ctgcacctgccctcgcgggacctggtctgcgcgcccatcgattccaaagagggccgcgat
tattaccaggctatggcctgcggtgtgaattgcgccctggccaaccggcaggtgctgggg
cacctggtccggcaggcctttgccgaaatgtttccgttggcccgtctggaattgctctac
gatgtgagccacaacacctgcaaggtcgaagaccacgatgtcgatggactgcgcaagtcc
ctgtatgtgcaccgcaagggggcgacccgctcttttgggccggggcgtcaggaacttcca
gccgcctaccgcggcgtgggacaaccggtgctgatcggtgggactatggggacggcgtcg
tatattctggccggtacggtggagagcgaggccatggcctggggctcggcctgccacggc
gccggacgggccatgagccgcaagcaggcgacgaagcggtggaaaggcaagagtgtactc
cacgaactggaacaccgcggtatcctggtgcgtgcggccagtcagcgtggtgtggctgaa
gaggccccgggggcctataaagacgtcgacgaggtcgtggaatctacccaccatgccggg
ttggcgcgcaaggtgggccgcttgcgacccctggcctgtatcaaggggtga
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