Desulfohalobium retbaense: Dret_0843
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Entry
Dret_0843 CDS
T00989
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
drt
Desulfohalobium retbaense
Pathway
drt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
drt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dret_0843
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
drt03021
]
Dret_0843
03019 Messenger RNA biogenesis [BR:
drt03019
]
Dret_0843
Transcription machinery [BR:
drt03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Dret_0843
Messenger RNA biogenesis [BR:
drt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Dret_0843
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
AAA
NACHT
Fan1_SAP
AAA_25
OB_RNB
ATPase_2
S1CSD-TOTE-2
AAA_14
Motif
Other DBs
NCBI-ProteinID:
ACV68134
UniProt:
C8X137
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All DBs
Position
999635..1000882
Genome browser
AA seq
415 aa
AA seq
DB search
MNLSEMKRKSMAELMQLAKEYKVENPSGLRKQELIFAILSSCASQNGSIYGEGVLEILPD
GFGFLRSPMYSYIPGPDDIYVSPSQIRRFGLRKGDVVSGQIRPPKEGERYFALLRVQQVG
FATPEESKNLVLFDNLTPIYPDQRFVMETGAESYSSRVVDLLAPIGKGQRGLIVAPPRTG
KTMLLQSIANSITANHPDSYLIVLLIDERPEEVTDMERTVDGEVVSSTFDEPPQRHVQVA
EMVLEKAKRLVERKKDVVILLDSITRFGRAHNAIIPSSGRVLSGGLDSNALQRPKRFFGA
ARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMEIYLDRHLADKRVFPAIDINRS
GTRKEDLLLDENVLNRVWILRKLLAPMNSVESMEFLLDKMRGTKSNREFLDMMNS
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgaatctatccgagatgaaaaggaaatccatggccgaactcatgcagttggccaaggag
tataaagtcgaaaacccaagcggtcttcgcaagcaggaactgatttttgccatcctcagt
tcctgtgcttcgcaaaacggctcgatctatggggaaggcgtgctggagattttgcccgac
gggttcggctttcttcgctcccccatgtacagctatattccgggaccggacgatatttac
gtctccccgtcgcagatccgccgcttcggcctgcgcaagggtgacgtggtctccgggcag
atccgcccgcccaaggaaggggagcggtatttcgctttgctccgggtacagcaagttggg
tttgccactccagaagaatccaagaacctagtcctgtttgataatttaacgccgatttat
ccggaccagcgctttgtcatggaaactggggcggaaagctactcctcgcgggttgtggat
ctgctggcccccataggtaagggacagcgcgggctcatagtagccccgccacgcaccgga
aaaacgatgcttttgcaaagtatcgccaactccattaccgccaaccaccctgattcctat
cttattgtgctcctgatcgacgaacgacctgaagaagtgacggatatggagcgtaccgtc
gacggcgaagttgtcagttcgacgttcgacgagcctccccaacgtcatgtccaggtggcg
gaaatggttttggaaaaagccaaacgccttgtggaacgcaaaaaagatgtcgttatcctc
ctggacagtatcacccgtttcggtcgagcccacaacgcgatcattccttcgtcaggacgg
gtcctctctggcggtctggactccaacgccctgcaacgaccgaagcgtttttttggggct
gcgcggaatatcgaggaaggcgggagtctgaccattatcgctacggcgcttatcgatacc
ggatcgcgcatggatgaggtcatctttgaggaattcaagggcaccggaaatatggaaatt
tacctggatcgccatctggccgacaagcgcgtctttccggccattgatatcaaccgttcc
ggcacccgcaaggaggacctgcttttggacgagaacgtcttgaaccgggtttggatattg
cgtaagcttctggctcccatgaattcagtggagagcatggagtttctcctggacaaaatg
cgcggcacaaagagcaaccgcgagtttctcgatatgatgaacagttag
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