Desulfohalobium retbaense: Dret_1396
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Entry
Dret_1396 CDS
T00989
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
drt
Desulfohalobium retbaense
Pathway
drt03030
DNA replication
drt03430
Mismatch repair
drt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
drt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Dret_1396
03430 Mismatch repair
Dret_1396
03440 Homologous recombination
Dret_1396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
drt03032
]
Dret_1396
03400 DNA repair and recombination proteins [BR:
drt03400
]
Dret_1396
Enzymes [BR:
drt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Dret_1396
DNA replication proteins [BR:
drt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Dret_1396
DNA repair and recombination proteins [BR:
drt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Dret_1396
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF761
Motif
Other DBs
NCBI-ProteinID:
ACV68683
UniProt:
C8X2N6
LinkDB
All DBs
Position
complement(1627732..1631211)
Genome browser
AA seq
1159 aa
AA seq
DB search
MTDFTHLHCHTEYSLLDGAIRIGDLCQQAVDFGFSSVAISDHGNLFGALDFYLTAKKFGV
KPIIGCEVYVAPGDRRTKHTDKDIRSGYHLVLLAQNLTGYYNLVRLVSRGWLEGFHYKPR
VDKELLSQWNEGLIALSACLKGEVPYGLRHEGMSRGKALAEEYSALFPGRFYLELQANGI
PEQVTLNEQLLELAETTKLPLVATNDCHYLSYNDVEAHDILLCIQTNAQYYAKDRMRFDT
QELYYRPPEEMEQAFAHCPQALENVGAIARNCNVELDLGQNYFPVYDVPQGRTLEEEFIR
LVREGLRTRLAKLPYTVDEEVYWQRLDTELDVICAKGFPAYFLIVQDFINWAKEQGIPVG
PGRGSAAGSLVAYCLGITNLDPLRYNLLFERFLNVERASMPDIDVDFCYNRREEVIRYVT
AKYGKESVAQITTFGTMKAKAVVRDVGRALGLSFAETDKIAKLVPDDLKMTIDKALEQEP
DLAALAENDETVAKLIDVSRRLEGLARHASTHAAGIVISDSHPLEDHLPLYLGKKGEVVT
QFDMKKVEKVGLIKFDFLGLKTLTVIADTLHLAQQAGKSVPDIDTLPLEDEATFALLCRT
ETDGVFQLESSGMRNVIKDLQPTSFEDIIALLALYRPGPLESGMVTDFIRRKHGEIPVEY
PHPLLEPILEATYGVILYQEQVMRIASDMANYSLGDGDILRRAMGKKDPSVMAEQRTKFV
NGAKENEIDEATATYIFDLMEKFAGYGFNKSHSAAYALVSYQTAYLKAHYPVEFMAALIT
SEVSNTDKVIAHINACREMGIEVLPPDVNHSERHFTVENEKLRFGLSGVKNVGGGAIEAL
VAERRRNGPYASLLDFCKRVGSRKVTKRVLESLIKSGAMDSLGCSRASLLAALDKVVSTA
QRQSRDKSRGQLSLMAMMGEEDSCVLSGIGMDIEEAQVEEWDDEKRLQYEKEALGFFLSG
HPLLRFREELKRQRLLSLQDCGELGGDTEVRTAVLVTGVKEHVTKKGGRMAFCQIEDLTG
TGEMTMFPETYAKVRNGLDLEQPLVVTAKISSYEGGGNGDEGAKQIKLLAQEVGLLNDQV
GRGDEPVRVDIEAAALQGQSAQELKQIIGRYPGRAPVHLGVCLERADCVLQLGPNYRVAA
SPDFWREIRRWQSAHRPAS
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgactgattttacccacctgcattgccataccgaatacagcctgctcgacggggccatc
cgtatcggcgatctctgccaacaggcggtggacttcggattctccagcgttgccatcagc
gaccacggcaacctcttcggagctctggatttttatctcacggccaaaaaattcggggtc
aagccgattatcggttgcgaggtctacgtggccccgggagaccggcgtaccaaacacacg
gacaaggacattcgctccgggtaccatctggttttgctggcccagaatctgaccggctac
tacaatctcgtgcgtctggtcagccgggggtggctggagggattccattacaagccccgg
gtggacaaggaacttttgtcgcagtggaacgaagggttgatcgccctgtccgcttgtctc
aagggagaagtcccgtatggtctgcgccacgagggcatgagccgcggcaaggccctggcg
gaggagtacagtgccctgtttccggggcggttctatcttgaactgcaggccaatggcatt
ccggaacaggtgacgctcaatgagcagctcctggagttggccgagacgaccaaactgccg
ctggtggccaccaatgactgccactatctgagctacaacgatgtcgaggcccacgacatc
ctgctgtgcatccagaccaacgcccagtactatgccaaggatcggatgcgctttgatacc
caggagttgtattatcggcctccggaggaaatggagcaggcctttgcccattgtccccaa
gctctggagaatgtcggtgcgattgcccgcaactgcaatgtggaactcgacctggggcag
aactattttccggtctacgatgtgccgcaagggcggactctggaagaggaatttatacgt
ctcgtccgggaaggattacggactcgcctggccaaattgccgtacacagtcgacgaagag
gtctattggcagcggctggacactgaactcgacgtcatctgcgccaaaggattcccggcc
tatttcctgattgtgcaggattttatcaattgggccaaagagcagggcatcccggttggt
cccggccgggggtcggccgccgggagtctggtggcctattgtttggggatcaccaacctg
gatcctttgcggtacaatctcctgttcgagcggttcctcaatgtggagcgcgcgagcatg
ccggatatcgatgtcgacttctgctacaaccgccgtgaagaagtcattcggtatgtcact
gcgaaatacggtaaagagagtgtggcgcagatcacgaccttcgggacgatgaaggccaag
gcggtggttcgtgatgtgggccgggctctgggactcagttttgccgaaacggacaaaatc
gccaagctggtcccagacgacctgaagatgaccatcgacaaggccttggaacaggaaccg
gacctcgcggccctggctgaaaacgacgagaccgtggccaaactcatcgacgtctcgcgg
cgcctggaggggcttgcccggcacgcttcgacccatgccgccggaatcgttatttctgac
agccaccccctggaagaccatttgcccctgtacctcgggaaaaagggcgaagtggtgacc
cagttcgacatgaaaaaggtcgaaaaagtcggtctgatcaagtttgattttttggggttg
aagaccctgaccgtgatcgctgacacgctccatctcgcgcagcaggcgggaaaatccgtt
ccggacattgacacgttgcctttggaggatgaggccacctttgcgctgttgtgccgaacg
gagaccgacggggtctttcaactggaaagctccgggatgcgcaatgtgatcaaggacctg
caaccgacgtcctttgaggatatcattgccttgttggccctgtaccggcctggaccgctg
gaaagcgggatggtcaccgatttcattcgccgcaagcacggcgaaatcccggtcgagtat
ccccatccgcttctggagcccattctggaagcgacgtacggggttatcctctaccaggaa
caggtcatgcgcatcgcctcggacatggccaattattccctgggcgacggggatatcctg
cgccgggccatggggaaaaaggatccctcggtcatggccgagcagcggaccaagttcgtc
aacggggccaaggaaaacgagatcgacgaggcgacggcgacctatattttcgatctcatg
gagaaattcgccggctacggcttcaataaatcgcactcggccgcctatgctctggtttcc
taccagaccgcctacctcaaggcccactatcccgtagagttcatggccgcgctgatcacc
tcggaggtgagcaacaccgacaaggtcattgcccacatcaacgcctgccgggaaatgggc
attgaagtgctgcccccggatgtgaatcacagtgagcggcatttcacggtcgaaaacgag
aagctccgtttcggcctctccggggtcaagaatgtcggcggtggggccatcgaggctctt
gtggccgagcgccgccgtaacggtccctacgcaagtctgctcgatttctgtaaacgcgtc
ggctcgcgcaaggtcaccaaacgggtcctggaaagtctgatcaaaagcggggcaatggac
agcctcggatgcagccgggcttcgcttctagcggcattggacaaggtggtttctacggcc
cagcgtcagagtcgggataaatcgcgcggccaattgtcgctgatggccatgatgggcgaa
gaggacagttgcgtgctcagcggcatcgggatggatatcgaggaggcccaggtcgaggaa
tgggacgacgaaaagcggctgcaatatgaaaaggaagccctcggtttttttctcagcggc
caccccttgctgcgtttccgggaagaactcaagcggcaacggttgctgagtctgcaagac
tgcggcgagcttggtggcgacaccgaggtgcgcacagcagtgctggtgaccggggtcaag
gagcacgtgaccaaaaagggcggacggatggcgttttgtcagatcgaagacctgaccggg
accggggagatgaccatgtttcccgagacctatgccaaggtccgcaacgggctcgacctg
gaacagcctttggtggtcacggccaagatcagttcctacgaaggcggcggcaacggcgat
gaaggggccaaacagatcaaacttttggcccaggaggtcggccttttgaacgaccaggtc
ggacgaggggacgaaccggtccgcgtggatatcgaggccgcagccctgcaaggccaatcg
gcccaggaactcaaacagatcatcggccgttatccggggcgggctcctgtccacttgggg
gtctgtctggaacgcgccgattgtgttttgcaattggggcccaattaccgagtcgccgcc
agccctgatttttggcgtgaaatccgccgctggcaaagcgctcatcgtccggcatcctag
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