Desulfohalobium retbaense: Dret_1894
Help
Entry
Dret_1894 CDS
T00989
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD subfamily
KO
K03086
RNA polymerase primary sigma factor
Organism
drt
Desulfohalobium retbaense
Pathway
drt02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
drt00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Dret_1894
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
drt03021
]
Dret_1894
Transcription machinery [BR:
drt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Dret_1894
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
Exonuc_VII_L
Mt_ATP-synt_B
Motif
Other DBs
NCBI-ProteinID:
ACV69178
UniProt:
C8X431
LinkDB
All DBs
Position
complement(2174960..2176723)
Genome browser
AA seq
587 aa
AA seq
DB search
MSNIKDVQQIKTLIAEGKKKGFLTFDELNKALPNEVNQPEQIEEIITIFDQLDIAIVDAQ
TGKNLGMVAGDSGGDSEEEEELEITETEEVETTRSSDPVRMYLREMGIVPLLDREGEVEI
AKKIEDGELEVLYALIEVPVAVEELVGVGDDLQKGTIKLKDVVKTIEEDDPSEDEMNQRE
RVIYLLEELRKLYKKRVNIYYKLDECATLDKRVRGVQNKIIDYKHEVVQILRDIKLEKTL
IDRVIETLHDYVRQMHNCRRDLSAYVLSVGKTRGEIEEIFAELDRRELNPVIAADNLGMT
VEELFSFKEMLAGKMEILQRLEEKCCHSVTDLEEILWRINRGNYDALRAKQELIRSNLRL
VVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQ
ARTIRIPVHMIETINKLIRTSRYLVQELGRDPQPEEIAERMDYPVEKVKKVLKIAKEPIS
LETPIGDEEDSSLGDFIEDKKAVAPAEEAVNSKLAEQISTVLSELTPREEQVLRKRFGIG
EKSDHTLEEVGKLFNVTRERIRQIEAKALRKLRHPVRSQSLRSYYES
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgagtaacatcaaggatgtccagcagattaaaacgctcatcgccgagggcaaaaagaag
gggtttttgacctttgatgagctaaacaaagccctgcccaacgaggtgaaccaaccggag
cagatcgaagagattatcaccatcttcgaccagttggacatcgccatcgtggacgcccag
acaggcaaaaatctgggcatggtggccggtgactccgggggagattccgaggaggaagaa
gaactcgagatcacggaaaccgaagaggttgaaaccacacgcagttccgatcccgtgcgc
atgtatctgcgcgagatggggattgtgcccctcttggaccgcgaaggcgaggtcgagatc
gccaagaagatcgaggacggagaattggaggttctctacgccttgatcgaagtccctgtg
gccgtggaagaactggtcggggtcggcgacgacctccagaaagggaccatcaaactcaag
gatgtggtcaagaccatcgaggaagacgacccgtccgaagatgagatgaaccagcgcgag
cgggtcatttacctgcttgaagagctgcgcaagctctataagaaacgcgtcaatatctat
tacaagcttgatgagtgcgcgacgctggacaagcgggtgcgcggcgtccagaacaagatc
atcgactacaaacacgaagtcgtgcagatcctgcgggatatcaagctggaaaaaacgctc
atcgaccgggttatcgagaccctgcacgattacgtgcgccagatgcacaactgccggcgc
gacctttccgcctatgtcctgtctgtgggcaagacccggggcgagatcgaagagatcttc
gccgaactcgaccggcgcgagctcaatccggttatcgctgcggacaatctgggcatgacc
gtggaagagctcttttctttcaaggagatgctggccgggaagatggagattttgcagcgc
ctggaagagaagtgctgccattccgtgaccgaccttgaagagatcctgtggcgcatcaac
cgcggcaattacgacgccctgcgggccaagcaggagcttatccgctccaacctccgtctg
gtggtttccatcgccaagaaatacaccaaccgcggtctgcaattcctggatctcatccag
gaaggcaatatcggcctgatgaaagccgtggacaaattcgagtaccagcgcggctacaag
ttttcgacctacgccacgtggtggatccggcaggccatcacccgggccattgccgaccag
gcgcggaccatccgtattccggtgcacatgatcgagactatcaacaagctcatccggacc
tcgcgctatctggtccaggaactggggcgtgatcctcagcccgaggaaatcgccgagcgc
atggactatccggtggagaaggtcaagaaggtcctcaagatcgccaaggagcccatctct
ctcgaaacgcccatcggcgacgaggaggattccagtctgggcgattttatcgaggacaag
aaagccgtggccccggcggaagaggcggtcaattccaagctggccgagcagatctccaca
gtgctttccgaactcacgccgcgcgaggaacaggtcctgcgcaaacggttcggcatcggc
gagaaatccgatcacacgctggaagaagtgggcaagctgttcaacgtcactcgggaacgt
atccggcagatcgaggccaaggcgctgcggaaactgcgccaccccgtgcgcagccagagc
ctgcgttcctattacgaatcctag
DBGET
integrated database retrieval system
