Desulfohalobium retbaense: Dret_2285
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Entry
Dret_2285 CDS
T00989
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
drt
Desulfohalobium retbaense
Brite
KEGG Orthology (KO) [BR:
drt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
drt03016
]
Dret_2285
Enzymes [BR:
drt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Dret_2285
Transfer RNA biogenesis [BR:
drt03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Dret_2285
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
ACV69569
UniProt:
C8X572
LinkDB
All DBs
Position
complement(2595828..2597897)
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AA seq
689 aa
AA seq
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MRHETQQITSGTVVEFMQSNQPIVAWVVDAQPNRLRVVTINKRESKLPAARVLPWSGPSY
TAAASREEFLERLEQHQQRRVQLAAELEPESLWDLVRDDVQRGTARWFAELIWADPDADQ
IAAMGRALLESKAHFKFVTPNFEIYSEEKVQLRLAEMEAARRRQELIDHGHGFLKALWAK
RRGEETVLPELSAELVDQLRQLLQRRMADPEDGETANVWRELRKGLPDDPHLPLRLAQAW
GLVPEHYNVLLDRAGYSWGDGWSQAYTQEIERLENVVGEGAGNPEPERFVSIDGASTEDL
DDAFFLERDGEGYRLTLALACPVWGWHFGSPLDQAVAERATSLYLPEGASHMLPERLGTG
LYSLRAGQTRPALLVDMALDARGSLQEVSPRLGWVRVAENLTYAAVEEAMAGGTAPAMLT
EALDLATTLRDRRIRNGAVIIERPEPELVLEDEGQTTRVRLEMKEPTPQAQLVVSEFMIL
TNRAVAQWANAQGVSLVHRTQDINLGNGSAGIWSDPAQAYQIVRQMGPSKLALAPQPHAS
LGVNAYVPVTSPLRRYTDFLNMAQIMTFVQSGQARLDAAAFEELLPYLSARQDNVAQIQR
FRPRYWKLEYLRQNQDAWWPGIVVEAGPKLITVALPREQVLLRGKRNLFDEPPSVGERLL
VRVGKIDPLNNAIELMEVREETWDNSCLQ
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgcgacatgagactcagcagatcacctcggggacggttgttgaattcatgcagagcaac
cagccgattgtggcctgggtggtcgacgcccaacccaatcgactgcgtgtggtaacgatc
aataaacgggaaagcaaactccctgcggcccgggtgctgccctggtccgggccgagctac
accgccgcagcctcccgggaggaattcctggagcgcctggagcagcaccagcagcgccgg
gtgcaattggccgcagaactggagcccgagtccctgtgggacttggtacgcgacgatgtc
cagcgtggcacggcccggtggtttgctgaactcatctgggccgaccctgacgccgaccag
atcgcggccatgggccgggcgcttttggaaagcaaagcccacttcaagttcgtcactccc
aattttgagatttattccgaggaaaaggtccagcttcgcctggcagagatggaagcggcc
cggcggcgacaggaactgatcgaccacggccacggttttttaaaggcgctctgggccaag
cgccggggcgaggaaacggtcctgccggaattgtcggcggaattggtcgaccagttgcgc
cagcttcttcagcggcgcatggccgatcctgaagatggggaaaccgccaatgtctggcgg
gaactgcgcaaaggactgcccgacgacccccatttgcccttgcgtctggcccaggcctgg
ggacttgttcccgagcactataacgtccttctggaccgggccgggtacagttggggcgac
ggttggtcccaggcctatacgcaggaaattgaacgtctggaaaacgttgtcggggagggc
gccggcaatccggaaccggagcggttcgtcagcatagacggggcctcgaccgaagacctc
gacgacgcctttttccttgagcgcgacggcgaagggtaccgcttgacgctcgccctggcc
tgtccggtctggggatggcacttcggcagcccgctggaccaggccgtggctgagcgggcg
acaagcctgtatctcccggaaggagcgagccacatgctccccgaacggctcggcaccggg
ctgtacagtctgcgcgcgggacagacccggccggccctgctggtggacatggccctggat
gcgcgtgggagcctgcaggaggtctctccccgtctgggctgggtgcgggtggcggaaaat
ctgacctatgcggcggtggaagaggctatggccgggggaacggccccggccatgctcacc
gaggccctggatctggcgaccaccctgcgcgaccggcggatccgcaacggcgccgtgatc
attgagcgcccggaacccgagttggtcctcgaagatgaggggcagaccaccagagtccgt
ctggagatgaaggaaccgaccccgcaggcccagttggtggtcagcgaattcatgatcctg
accaatcgtgctgtggcccagtgggccaacgctcagggggtgagcctggtccacaggacg
caggatatcaatctgggaaacggcagcgcggggatctggagcgatccggcccaggcctac
cagatcgtgcggcaaatggggccgtccaaactcgcgttggcgccccagccccatgcgagt
cttggggtcaatgcctatgttccggtcacctcccccttgcggcgttataccgattttctc
aatatggcccagatcatgacctttgtgcagtcgggccaggcgcgtctggatgcggcggcc
tttgaagagctgttgccgtatctgagcgctcgacaggacaatgtggcccagatccagcgg
tttcggccacgatactggaaattggagtacctgcgccagaatcaggacgcgtggtggccg
ggtattgtcgtcgaggccggtcccaaattgatcacggtggcgctaccccgggaacaggtc
cttttgcggggcaaacgcaatcttttcgatgaacccccctctgtcggcgagcgtcttctg
gtccgggtgggcaaaatcgaccccttgaacaacgcaatcgaactcatggaagtgcgggag
gaaacatgggacaattcctgtttacaatag
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