Desulforamulus ruminis: Desru_0006
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Entry
Desru_0006 CDS
T01518
Name
(GenBank) DNA gyrase, B subunit
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
dru
Desulforamulus ruminis
Brite
KEGG Orthology (KO) [BR:
dru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dru03032
]
Desru_0006
03400 DNA repair and recombination proteins [BR:
dru03400
]
Desru_0006
Enzymes [BR:
dru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
Desru_0006
DNA replication proteins [BR:
dru03032
]
Prokaryotic type
DNA Topoisomerases
Desru_0006
DNA repair and recombination proteins [BR:
dru03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Desru_0006
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
HATPase_c_3
GyrB_hook
Motif
Other DBs
NCBI-ProteinID:
AEG58313
UniProt:
F6DL04
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All DBs
Position
4548..6467
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AA seq
639 aa
AA seq
DB search
MDQQQQQLNEYSADQIQVLEGLEAVRRRPGMYIGSTSARGLHHLVYEVVDNSIDEALAGY
CSRIEVIIHKDNSVTVEDDGRGIPVGIQSKVGKPAVEVVLTMLHAGGKFGGGGYKVSGGL
HGVGVSVVNALSSELEVEIKLDGNLYYQKYSRGIPVTELKIIGKSKSTGTKITFKPDEEI
FEELVFSLETISQRMRELAYLNKGIKIILRDERKETENEQVFQYEGGIQDFVKHLNRNKQ
VLHAKPIYLSGEKEYVSVEIAMQYNDSYSETMLSYANNIHTTEGGTHEVGFKTALTRIIN
DYGRTHNILKNNDPNLIGEDIREGATIVISVKVPEPQFEGQTKTKLGNSEVRGIVDSIFS
EALSTYLEENPSVAKKIIEKGVTASRAREAARKARELTRRKSALETMSLPGKLADCSEKD
PSLCELYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARMDKILANEEIRAMITAL
GCGIGEDFDISKARYHKIVIMTDADVDGSHIRTLLMTFFYRHMRELIEAGYLYVAQPPLY
RARKGKHDSYLYSDEELEQLLKRIGYDNVNIQRYKGLGEMNPEQLWETTMDPDTRTMLQV
TLEDALEADATFSMLMGDRVEPRKDFIQENARYVRNLDI
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atggaccagcagcaacaacagcttaatgaatatagtgcggaccagattcaggttttagaa
ggtttggaagccgtccggcgccggccgggtatgtatattggcagcaccagtgccaggggt
ctgcaccatttggtttatgaagtggtggataatagtattgacgaggcactggctggttat
tgtagtcgcattgaagtcattatccataaagataattcggttacggttgaagatgatgga
cgaggtatcccggtaggtatccaaagtaaagtgggtaaaccggcggtggaagtggtttta
accatgcttcatgccggcggtaaatttggcggcggtggttacaaagtttccggtggtttg
cacggggtgggcgtttcggtggtaaatgctctttccagcgaactggaagtagaaattaag
ctggacggaaatttatactaccagaaatattcccggggcattcctgtaacagaattaaaa
atcattggtaaaagtaaaagtaccggcacaaaaatcacctttaagccggatgaagagatt
tttgaagaactggtgttcagtctggaaaccatttctcagcgcatgagagagttggcttat
ttaaataaagggattaaaatcatcctgcgggatgaacgaaaagaaaccgaaaatgaacaa
gtttttcaatacgagggtggaattcaggatttcgtaaagcatcttaacagaaataaacag
gttctgcatgccaaacccatttatcttagcggtgaaaaggaatatgtcagtgtagaaatt
gctatgcaatataatgattcctacagtgaaaccatgttatcctatgccaataatattcat
accactgaaggcggaacccatgaagtaggctttaaaaccgctcttacccggatcatcaat
gattatggacgtacgcacaatattcttaaaaataacgatcccaatcttattggggaggat
atccgtgaaggagccaccattgttattagtgttaaagtccctgagcctcaatttgaggga
caaactaagaccaagctgggtaacagcgaagttagaggcattgtcgattctattttttct
gaagctttatcgacctatttggaagaaaatccttcggtagcaaaaaagattattgaaaaa
ggggttacggcatccagagccagggaagcagctcgcaaggccagagaacttacccgcaga
aagagcgctttggaaaccatgtctttaccgggaaaattagcggattgctcggaaaaggac
cccagcctttgtgaattatatctggtggagggcgactcggcgggaggctcggctaaacaa
ggcagagaccggcgttttcaggctattttgcctttaaggggtaaaattcttaatgtggaa
aaggctagaatggacaaaatcctggccaatgaagaaatcagggccatgattacggcttta
gggtgcggtattggggaagattttgatattagcaaggcccgttaccataaaattgtgatt
atgaccgatgccgatgtggatggatcccatattcgtaccctgctgatgacctttttctac
cgccatatgagagaattgattgaggcaggatatctatacgtggctcagccacccctttac
agagcgcgcaaggggaagcacgacagttatttatacagcgatgaagaactggaacaactg
ctaaaaagaattggttatgataacgtaaacattcagcgttataaaggcttgggtgaaatg
aatccggagcagttatgggagaccaccatggatccggacacccggaccatgttgcaggta
accctggaagacgccctggaggcggacgctacgttttccatgctgatgggggaccgggta
gagccaagaaaagactttatccaggaaaatgcccgttatgtaagaaatctggatatataa
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