Desulforamulus ruminis: Desru_0291
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Entry
Desru_0291 CDS
T01518
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dru
Desulforamulus ruminis
Pathway
dru03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dru00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Desru_0291
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dru03021
]
Desru_0291
03400 DNA repair and recombination proteins [BR:
dru03400
]
Desru_0291
Enzymes [BR:
dru01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Desru_0291
Transcription machinery [BR:
dru03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Desru_0291
DNA repair and recombination proteins [BR:
dru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Desru_0291
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AEG58588
UniProt:
F6DPB5
LinkDB
All DBs
Position
295450..299046
Genome browser
AA seq
1198 aa
AA seq
DB search
MLELNNFDSIRIGLASPEKIRQWSSGEVKKPETINYRTLKPERDGLFCERIFGPQRDWEC
HCGKYKRVRYKGVVCDRCGVEVTRSKVRRERLGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRALEKVLYFVSYIVIEPGETPLLKKQLLTETEYREYKDKFGNTFKAGMGAEAIKKLLE
EIQLDELARELRQELKEVSGQRKIRAIRRLEVVEAFKKSGNSPQWMILDVVPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPHLKMHQCGLPKE
MALELFKPFVMKKLVNDGHAHNIKSAKRMVERVRPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPVLVEGRAIKIHPMVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAANNIL
NPKDGKPVASPTQDMVLGCYYLTMEREGAAGEGSIFKDEQESVLAYESGEVSLHAGVTVR
RSNGERLKTTVGRIIFNEVIPQELGYINQVCDKKTLSRIVAECYRKLGNAHTAELLDGIK
SLGYKFSTKAGITIGVADITIPEAKKEILAIAEDQVNKIENQFRRGLITEDERYRKVINI
WNDATDKVTKALMDTLDKFNNIYMMATSGARGNIQQIRQLAGMRGLMADPSGRIIDLPIK
ANFREGLTVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVAQDVIVREDDCGTTEGV
EVREIRDGSESIEKLSERLEGRVPMEPVVHPETGEVIISQEQVDNHGMISADQAQAVMDA
GITKVKIRSVITCKTRYGVCKHCYGRNLATGGAIDTGEAVGIIAAQSIGEPGTQLTMRTF
HTGGVAGDDITQGLPRVEELFEARRPKGQAIVAEEEGIVALREVKGRREIEITKDNGEKN
IYAVPYGARLKVRDGQRVEAGDELTEGSVNPHDLLKIKGPAGVQIYLLQEVQRVYRLQGV
EINDKHIEVMIRQMLRKVKVEEAGDTELLPGGLIDVFEFEEENQRVIQNGGEPAVAKPVL
LGITKASLATDSFLSAASFQETTRVLTEAAIKGKLDPLLGLKENVIIGKLVPAGTGMPRY
RNIEVFTEDEADNEDDYDILLPTIDKNRGYNLSSELDLLSEEPLRRGTSEDFDLALDK
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
ttgttggaattaaataatttcgatagtattcgcattgggttggcctcgccggaaaaaatt
cggcagtggtccagtggagaagtaaaaaagccggagacaatcaactaccgtacattgaaa
ccggaacgggatggtttattctgtgagagaatatttggtccacaaagagactgggaatgt
cactgcggaaaatataaacgggttcgctataaaggggttgtttgcgatcgctgcggtgtg
gaggtaacccggtccaaggtccgcagggaaaggctgggccatatcgagttggccgccccg
gtatctcatatttggtattttaaaggaattcccagccgcatgggcctgttgctggatatg
tccccccgggcgctggaaaaggtgctttactttgtttcttatattgtcattgagcccggt
gaaacacccctgttaaagaagcagttgttaactgaaacggaataccgggaatataaggat
aaatttggcaatacctttaaggcgggcatgggtgccgaggccattaaaaaactgttggaa
gagattcaactggatgaactagccagagaacttcgccaggaattgaaagaagtctccgga
caacgcaaaatccgggccattcgccggctggaagtggtggaggcctttaagaaatcggga
aatagcccccagtggatgattttggatgtggtgccggtaattcctccggaactgcggccc
atggtacaactggacggcggccgctttgccacttcggatttgaatgatctataccgccgg
gtcattaaccgcaacaaccggctgaagcgcctgttggacctgggagccccggatattatc
gtgcgcaacgaaaagcggatgcttcaggaagcggtggacgccttaattgacaacggccgt
cggggccggcctgttacaggtcccgggaaccgtccgttaaaatccttgtccgacatgttg
aagggtaaacaggggcgtttccgtcagaacctgctgggcaaaagggttgattactccgga
cgttcggttatcgtggtgggtccccatttaaaaatgcaccagtgcggcttgcccaaagaa
atggctttggaattgttcaagccctttgtgatgaaaaagttggtgaacgacgggcacgcc
cataacattaagagcgccaaacggatggtagaaagggttcggcccgaggtctgggatgtt
ctggaagaagtgattaaagaacacccggtactgttgaaccgtgccccaaccctgcaccgg
ctgggcattcaggcctttgagccggttctggtggaagggcgcgccattaagatccacccc
atggtatgtaccgcttacaatgcggactttgacggggaccagatggctgttcacgtaccc
ctttccgcagaagcccaggcggaagccaggctgctcatgctggcggctaataatattctg
aaccctaaagacggaaagccggtggccagccccacccaggacatggttttaggctgctat
tacctgaccatggaacgggaaggggctgcgggtgaaggcagtatctttaaggatgagcag
gaatcggttttagcctatgaaagcggggaagtttcccttcatgccggcgtaactgttcgc
cggtccaacggagagaggctgaagaccacggttggcagaatcatctttaatgaagtaatt
cctcaggaattgggatatatcaatcaggtttgcgacaagaaaacccttagcaggattgtg
gccgaatgctaccgcaagctgggcaacgcccatacggcagaacttctggacggcattaaa
tccctgggctacaagttttctaccaaggcggggattaccatcggggtagcggatattacc
atccccgaggccaagaaggaaattctggctattgccgaggatcaggttaataaaattgaa
aatcaattccgccgcggtttaattaccgaagacgaacgttaccgtaaggttattaatatc
tggaacgacgccaccgacaaggtgaccaaggcgttaatggacaccctggataaatttaat
aatatttatatgatggctacttccggggcccgcggtaatatccagcagattcgccagctg
gccggtatgaggggtctgatggcggatccttccggacggattattgacttgcccattaag
gccaacttccgggaaggcttaacggtattggaatacttcatttccacccacggcgctcgg
aaaggtttggcggataccgctctgcggaccgctgactccggttacctgacccgccgtctg
gtggacgtagcacaggatgtaatcgtgcgggaggatgactgcggcaccaccgagggtgtg
gaagtccgcgaaatcagggatggcagcgaaagcattgaaaaactctccgaacggctggaa
ggccgggtgcccatggagcccgtcgttcatccggaaaccggggaagtgattatttcccag
gagcaggttgataaccatggcatgatttccgctgatcaggctcaggccgtaatggatgcg
ggaattaccaaggtaaaaatccgctcggttattacctgcaaaacccgctatggcgtatgc
aagcattgctacggccgcaacctggccaccggcggagccattgataccggtgaagcagtg
ggaatcattgccgcccagtccatcggtgagccgggaacccagttaaccatgcgtaccttc
cacaccggcggtgtggccggggatgatattacccagggtctgcccagggttgaggaactc
tttgaggcccgccggccgaaaggtcaggccattgttgccgaggaggaagggattgtggcc
ctccgagaggtaaaaggccgccgagagattgagatcaccaaggataatggggaaaagaac
atctatgccgtaccctatggcgccaggttaaaagtccgggacggccagcgggtggaggcc
ggggatgaattaaccgagggttccgtcaacccccacgatctgttaaaaatcaaagggcct
gcgggagtgcagatttacctgctccaggaagtacagcgggtataccggctccagggcgtg
gagattaacgataagcatatcgaagtgatgatccgccaaatgcttagaaaagttaaggtg
gaagaggccggagataccgagctgctgcccggcggtctgatcgatgtatttgaatttgaa
gaagagaatcaaagggtgatacaaaacggcggggagcctgccgtggccaaaccggttctg
ctgggcatcaccaaggcctccctggctacggattccttcctgtcggcggcttccttccag
gaaaccacccgggtactgaccgaggcggccatcaaaggcaaactggacccgctgctgggt
ctgaaggaaaacgtcatcatcggaaagctggtacccgccggtacagggatgccccgttac
cggaatatcgaagttttcaccgaggatgaggccgataacgaagatgattacgatattctc
ctgccgaccatagataaaaaccgcggctacaatctgagcagcgaactggatctgctctcg
gaggagccgttaaggcgcggaacttcggaggatttcgacctggccttggataaataa
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