Desulforamulus ruminis: Desru_1863
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Entry
Desru_1863 CDS
T01518
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
dru
Desulforamulus ruminis
Brite
KEGG Orthology (KO) [BR:
dru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dru03032
]
Desru_1863
03400 DNA repair and recombination proteins [BR:
dru03400
]
Desru_1863
Enzymes [BR:
dru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Desru_1863
DNA replication proteins [BR:
dru03032
]
Prokaryotic type
DNA Topoisomerases
Desru_1863
DNA repair and recombination proteins [BR:
dru03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Desru_1863
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_TFIIB
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AEG60124
UniProt:
F6DU49
LinkDB
All DBs
Position
1879450..1881636
Genome browser
AA seq
728 aa
AA seq
DB search
MSKTLVIVESPAKAKSIGKYLGRNFTVKASMGHVRDLPKSQFGVDIDQEFSPKYITIRGK
GDIIKELRSAVKKSDRILLASDPDREGEAIAWHLTKLLDIDEQSPCRIEFNEITKNAIQQ
AVKNPRPIDQDRVNAQQARRILDRLVGYNLSPLLWRKVKKGLSAGRVQSVAVRLICDRED
EIQAFIPEEYWTLMGKFVKSGKSPFEAKLHKYKNKKIEIPNQEMMDKILGDLKGASYQVA
TVSKKEKQRNPAAPFTTSSLQQEASRKLNFTSRKTMVVAQQLYEGLDLGKEGPAGLVTYI
RTDSTRVSETASEEAKKFILDRFGPAYVPKQPRQTVAKGKVQDAHEAIRPTSIERDPENI
KQYLTNDQYKLYKLIWSRFLASQMASAVMDTTSLDIAAGDYVFRATGSVIKFPGFMQVYI
EGNDDGSKEEERLLPELSEGDKVEAKNLTPKQHFTQPPPRYTDATLVKILEEKGIGRPST
YAPIVDTIQKRGYVVRENKQFYPTELGIVVIDLLKNYFPDIINIEFTAEMEEKLDKVAEG
DERWVGILKDFYQPFQETLENADEKIGKVQVADEVTDEKCELCGRNMVIKLGRYGKFLAC
PGFPDCRNTKPLLEPTGVGCPKCSGEMVLRRSKKGRKFYGCSRYPECDFVTWDVPTQEKC
PQCGGMMVEKNSRGKEKRTECINEKCPGKEYKASEQTKKEAGAVSGKTAAKAGKKTPQRN
RKKANPSG
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaaaacattagttattgttgaatctcccgccaaggcgaaaagcattggtaaatat
ttaggaagaaattttacagttaaagcttctatggggcatgtgcgggatttgccgaaaagc
caatttggtgtcgatatagaccaggaattctcacccaaatatattactatccggggaaag
ggagatattatcaaagaactgcgttcggcagtgaaaaaatccgatcgaattttactggct
tctgacccggatcgtgaaggagaagccattgcctggcatttaaccaaacttttggatatt
gatgagcaaagtccctgccgcattgaatttaacgaaattactaaaaatgccattcagcag
gcagtgaaaaatccccggcccatcgatcaggatcgggtgaatgctcaacaggcccgaaga
attttagaccgcctggtgggttacaatttaagtcctctgctctggcggaaagtaaaaaaa
ggactgtccgccggcagggtgcagtcggtggccgtgcgcttgatctgcgaccgggaagac
gaaatacaggcttttataccggaagaatactggaccctgatgggcaaatttgtaaagtca
gggaagtctccctttgaagcgaagctacacaaatataaaaacaaaaagatagaaattccc
aaccaggaaatgatggataaaattctgggggatttaaagggtgcttcctatcaggtagcc
acggtcagcaaaaaggaaaaacagagaaatccggcagcgccctttaccaccagttccttg
cagcaggaagcttccagaaaactaaactttacctcccgtaagaccatggtggttgctcag
cagctttacgaaggtttggatttaggcaaagaaggaccggcgggtttggtaacctatatc
cgtacggattccacccgggtttccgaaacagcgtcggaagaagccaagaaatttattttg
gatcgctttggcccggcttatgttcccaaacagcccaggcaaacggtggccaagggcaag
gttcaagatgcccacgaggccattcgtccaacttccattgaaagagatccggaaaatata
aagcaatacttaaccaatgaccagtataaattatataaattgatctggtccagatttctg
gccagtcagatggcatcggcggtgatggacaccaccagcctggatattgccgctggtgat
tatgtgttccgggctacgggctcggtgattaaattccccggttttatgcaggtgtatatt
gaggggaacgatgacggcagcaaagaagaggaaagactcttgccggaactgtcggaagga
gataaggtagaggctaaaaacctgacacccaaacagcattttactcaaccgcctccgcgc
tataccgatgcaaccctggtaaaaattctggaggaaaagggcattggacgtcccagtact
tatgctcccattgttgacaccattcagaaacggggttatgtggtccgggaaaataaacaa
ttttatcccacggagcttggcatcgtggtgattgatttgttaaagaattattttccggac
attatcaatatcgaatttaccgcggaaatggaagaaaagctggataaggtggcggaaggc
gacgagcgatgggtggggattttaaaggatttttaccaaccctttcaagaaaccttggaa
aatgccgatgaaaagattggcaaggtacaagtagccgatgaagttaccgatgaaaaatgt
gagttatgcggtcgcaacatggtgattaagctggggcgctatggcaaatttcttgcttgc
ccgggctttccggattgtcgcaataccaaacccctgctggaacccaccggggtgggatgt
cccaaatgttccggtgaaatggtactgcgccgcagtaaaaaaggccgcaagttctatggc
tgcagccgctatccggagtgtgattttgttacctgggatgtgcccactcaggaaaaatgt
ccccagtgcggcggaatgatggtggagaaaaacagccgcggcaaggaaaagcgcacagag
tgcatcaatgaaaaatgtcccggcaaagaatataaagcctcagagcagaccaagaaagaa
gctggggcagtttccggcaagactgctgccaaggccgggaaaaagacgccccagcgaaac
cgcaaaaaagcaaatccatccggttaa
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