Desulforamulus ruminis: Desru_1942
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Entry
Desru_1942 CDS
T01518
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dru
Desulforamulus ruminis
Pathway
dru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Desru_1942
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dru03019
]
Desru_1942
03009 Ribosome biogenesis [BR:
dru03009
]
Desru_1942
Enzymes [BR:
dru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Desru_1942
Messenger RNA biogenesis [BR:
dru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Desru_1942
Ribosome biogenesis [BR:
dru03009
]
Prokaryotic type
rRNA helicases
Desru_1942
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Utp25_C
CMS1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AEG60199
UniProt:
F6DUR1
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All DBs
Position
1958719..1960317
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AA seq
532 aa
AA seq
DB search
MSQEKVTRAFGDLQLDPRVVDGLIDMGFEEPTPIQQLAVPLVLAGHDIIGQAQTGTGKTA
AFGIPLIQRLDFRKKGVQVIILTPTRELAIQVGEEITKIGRYRRIRVLPIYGGQSIDRQI
KSLRQGVQVVVGTPGRLLDHLRRQTLKLDQITMAVLDEADEMLDMGFIEDIEEILRHTPP
VRQTLLFSATMPDEITRLARQYLTEPKLVTVSKTNLTVPQIEQVYYEAPEKHKLEALCRL
LDITDIAQGIVFCRTKRGVDDLVSGLQARGYTAVSLHGDLSQQQRNTVMRQFRSGEVELL
VATDVAARGLDIEGVSHVINYDIPQDPEFYVHRIGRTGRAGRSGVAITIITPREYRQLRL
IENITKTRIKRERLPSIADVVERQKEGIKDRLIRIMEEGKLGYYRSVIDALVDEYDPMDI
AAAALKLSLDLEPSANEVDLDTVHFGNTGARPGMVRLFLTLGRKDRTSPAEIIKLFSDES
GISGSKIGSINIYENFSFVEVPEDWANCVMSCLHRLNYKGRRLFVEPARARR
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaagaaaaggttacacgggcttttggcgatcttcagttagatccacgggttgtg
gatggtttgattgatatgggctttgaggagcccactcccattcaacagttggctgttcct
ctggttttggcgggccacgacatcatcggccaggcgcagacaggcaccggcaaaacagca
gcctttggtattcccctgattcaacggctggattttagaaaaaaaggcgttcaagtgatt
attttgactcccacccgggagttggccatccaagtgggggaagaaattacaaaaatcggc
cgctaccgccgtattcgggtactgcccatttatggtggacagtccatcgaccgtcaaatt
aagtccctgcgtcagggagtacaggtagtggtggggactcccgggcgtctgttggaccac
ctccggcgtcagactttaaaactggaccagattaccatggcggtactggatgaagcggat
gaaatgctggatatgggctttattgaagacattgaggaaatcctgcgccatactccgccg
gtccgtcaaactctgcttttttcggccaccatgccggatgaaattacccggttggcacgg
caatacctgacggaaccgaagttggtcaccgtcagtaaaaccaatctgaccgtacctcaa
attgagcaggtctattacgaagctcctgaaaaacataagctggaagccctttgccggctg
ctggatataaccgatatcgctcaaggcattgttttctgccggaccaaacggggagtggac
gatctggtatccggcctgcaggccagagggtataccgccgtatctctacatggggacctc
agtcagcagcagcggaataccgttatgcgccagttccgttccggcgaggtggaactgctg
gtggctacggacgttgccgcaaggggtttggacattgaaggggtttctcatgttatcaat
tacgatattccccaggatcctgaattttatgtgcaccggatcggtcgcaccggccgggcc
ggcagatccggcgtggccataaccattattacgccccgggaatatcgccagctccggctg
attgaaaacataaccaaaacacgcattaaaagagagcgcctgcccagtattgccgatgtg
gtggaacgtcagaaggaaggaattaaggaccgtctgatccgcattatggaagaagggaag
ctgggttactatcgttcggttatcgacgctctggtggatgaatatgatcccatggacatt
gccgccgcagcccttaaattatccctggatctggagccgtcggccaacgaggtggatcta
gataccgttcactttggcaataccggtgcgagaccgggtatggttcgccttttcctgacc
ctgggacgaaaggacaggacttcaccggcggaaattattaagttgttttccgatgaatcg
ggaatttccggaagtaaaattggcagcatcaatatctatgaaaatttcagctttgtggaa
gttcccgaggattgggccaactgtgtgatgagctgcctgcaccggctgaattacaaggga
cgtagactgtttgtggaaccggcccgggccagacggtaa
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