Desulforamulus ruminis: Desru_2500
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Entry
Desru_2500 CDS
T01518
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
dru
Desulforamulus ruminis
Pathway
dru03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
dru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Desru_2500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dru03400
]
Desru_2500
Enzymes [BR:
dru01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Desru_2500
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Desru_2500
DNA repair and recombination proteins [BR:
dru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Desru_2500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_6
NFACT_N
Zn_ribbon_IS1595
Zn_ribbon_TFIIB
Auto_anti-p27
Zn_ribbon_SprT
Zn_ribbon_3
zf_UBZ
Motif
Other DBs
NCBI-ProteinID:
AEG60731
UniProt:
F6DP12
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All DBs
Position
2547371..2548204
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AA seq
277 aa
AA seq
DB search
MPELPEVETVVRSLEKNLAGLTITGVDIFMPKIIRSPKPEIFTEQIVGKQILKKLGRRGK
YLLIHLSHHVTLVVHLRMTGRLVYCEAGTPLEKHTHVVFHLNNDTMLKFTDIRQFGRMLL
VPTDQLSEITGLKNLGLEPLDPSFTREFLKKELRRKRTRIKPLLLDQYFIAGLGNIYADE
VLFQAKVHPERLALDLSTREVSGLHRAIVEIISGAIEHRGTTFRDYVDSEGRSGDFQHHL
KVYNREGFPCPRCGQPISRIKIAGRSSYYCPSCQKLK
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
ttgcctgaattacccgaagtcgaaaccgtggtccgttctctggaaaaaaatttggccggt
cttaccattaccggtgtggatatcttcatgcccaaaattattcgttctccaaaaccggaa
atcttcacggaacaaattgtggggaagcagatcttaaaaaaattgggccgtcggggtaag
tatttgttaatccatttaagccatcatgtaacgctggtagttcatctgcgtatgaccgga
cggctggtatactgcgaagccgggacacccctggaaaaacacactcatgtggtgtttcac
ctgaacaatgataccatgctgaaatttacggatattcgtcaattcggtcggatgcttctg
gttcccaccgatcagctttcagaaatcaccggtttaaaaaatctgggtttggagcctctg
gacccttcttttacccgggaatttctaaaaaaagaactgcggcgcaagagaacccggatc
aaacccctgctgctggatcagtattttattgcggggctgggaaatatctacgccgatgag
gtgctcttccaggccaaggtccatccggaacggctggccttggatttatccacccgggaa
gtctcaggactccaccgggccattgtggagattatttccggagccattgaacaccggggc
accacctttcgggattatgtggacagcgaaggccgctcgggcgactttcaacatcatcta
aaagtatacaatcgcgaggggttcccttgcccccgttgcggtcagcccatttcccgcatt
aagattgccggacgaagttcctactactgcccctcctgccaaaaactaaaatga
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