Desulforamulus ruminis: Desru_3411
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Entry
Desru_3411 CDS
T01518
Name
(GenBank) Xylose isomerase domain-containing protein TIM barrel
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
dru
Desulforamulus ruminis
Pathway
dru03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
dru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Desru_3411
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dru03400
]
Desru_3411
Enzymes [BR:
dru01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
Desru_3411
DNA repair and recombination proteins [BR:
dru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
Desru_3411
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
UvdE
Motif
Other DBs
NCBI-ProteinID:
AEG61614
UniProt:
F6DKY2
LinkDB
All DBs
Position
complement(3475114..3475974)
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AA seq
286 aa
AA seq
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MVWFGSAGAPDSFYSQGYKSSLDMPAWLAARGLNAYEYQCSRGVRIREEMARELGERARQ
QGIRLSIHAPYYINLSTEDSEKRLKTKGYLLDSLRAAQWMGATTVVFHPGGGPGENRRQT
FKRAKDCLKEILEEVAEAGLSHIFLAPETMGKVNQMGSLEEVLELCRLAPQVVPCIDFGH
INAVTQGGLKEKRDFARVLDQVAEVLGHSALKHLHAHFSPIEFTRAGEKKHWTLKESHLY
GPDFAPLAQLIFERKLEPIVICESQGTQAEDALVFKSLYEKQKAGE
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
ttggtttggtttggttcagcgggtgcaccggactccttttatagtcaaggctacaaaagt
tctttggacatgcccgcttggttagcggcccgggggcttaacgcctatgaatatcaatgc
agtcgtggtgtgcgaattagagaagaaatggctagggaactgggggaaagggcccgtcaa
cagggcattcggctatccattcatgcgccctactatattaatctaagcaccgaagattcc
gaaaaacgcctaaaaacaaagggctacctgctggattccctgcgggctgcccaatggatg
ggagcaaccaccgttgtttttcatcctgggggagggcccggtgaaaaccgccggcaaacc
tttaagcgagcaaaggattgtctcaaggagattttagaagaagtagcggaagcggggctg
agtcatatatttttggcgccggaaaccatgggtaaagtcaaccagatgggttccctggaa
gaggtgttggagctatgtcggttggcgccccaggtggtgccctgtattgactttggacac
attaatgcggtgacccagggaggtttgaaggagaagagggattttgccagggttttagat
caggtggcagaagttttaggacacagcgcgctgaaacatttgcatgctcatttcagcccc
atcgaatttacccgggcgggtgagaaaaagcactggaccctgaaagaaagccacctctat
gggcccgattttgctcctttggctcagttgatttttgaacgtaagctggagcccatcgtc
atttgtgaatctcaggggacccaggcagaggatgcccttgtttttaaaagcctttatgag
aaacaaaaggcaggggagtaa
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