Desulforamulus ruminis: Desru_3710
Help
Entry
Desru_3710 CDS
T01518
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
dru
Desulforamulus ruminis
Pathway
dru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Desru_3710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dru03021
]
Desru_3710
03019 Messenger RNA biogenesis [BR:
dru03019
]
Desru_3710
Transcription machinery [BR:
dru03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Desru_3710
Messenger RNA biogenesis [BR:
dru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Desru_3710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_22
AAA
ATPase_2
NACHT
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AEG61910
UniProt:
F6DP81
LinkDB
All DBs
Position
complement(3775468..3776811)
Genome browser
AA seq
447 aa
AA seq
DB search
MTESQKPVTTQAELESKTMRELYTIARDLEISGYYKLRKKELVFEISKLQTQQSGVSMAG
GVLEILPDGYGFLRPSTYVPSNDDIYVSVSQIRRFDLRTGDMVFGQVRRPKDNERYYGLL
RVEQVNGVNPELAAERMHFEGLTPLYPQQRIKLETFRDRISTRIIDLIAPLGKGQRGLIV
APPKAGKTILIKEIANSITANHPEIVLLILLIDERPEEVTDIERSVKAEVVSSTFDEPPD
NHVKASDMVLERAKRLVESGRDVVILLDSITRLARAHNLVIPPSGRTLSGGVDPAALHKP
KRFFGAARNMEEGGSLTILATALVETGSRMDDVIFEEFKGTGNMELILDRKLADRRLFPA
IDIQRSGTRREDLLLNKEELEYVWSLRRAITSMSPIEALENLLDRMKHTRVNEELLYDFK
PKPRPQQPEEPAKFIKRPYKRRIEERG
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
ttgaccgaaagtcaaaagcctgttacaacacaggctgaattagaatccaagaccatgcgg
gagttgtataccattgcccgcgacttggaaatttctggatattataaactgcgaaaaaag
gaactggtttttgagatatccaaactgcaaactcaacaaagcggtgtatccatggccgga
ggcgttttggaaatactccctgacggttacggctttctaagaccttcaacttatgtcccc
agcaatgacgatatttatgtttctgtttcacagatcaggcgctttgacttgagaaccgga
gacatggtttttggtcaggtccgaagaccaaaggacaacgaacggtattacggcctgttg
cgggttgaacaggtgaacggtgttaaccccgaactggctgctgaacgaatgcattttgaa
ggcctcacacctctctatcctcaacaaagaattaaactggaaaccttccgcgatcgtatt
tcaacccgaattattgacctcatcgcacccctgggcaagggtcagcggggtcttattgta
gcccctcctaaagcaggaaaaaccatattaatcaaggaaattgccaatagcattaccgca
aatcatcctgagattgtcctgttaatattattaattgacgaaagacccgaagaagtaacg
gatattgaacggtctgtaaaagccgaggtggtcagttcaacctttgatgagccgccggat
aaccatgttaaggcttccgacatggttttagaacgggccaagcggctggttgagagcgga
cgggatgtggtcattttactggacagcattacccggttggcccgggcccacaatttggtc
atcccccccagcgggcgaaccttgtccggcggcgtagacccggccgccctgcacaaaccg
aaaagattttttggcgctgcccggaatatggaagaagggggcagcttgaccatcctggct
acagcactggttgaaaccggcagccggatggatgatgtcatcttcgaagaattcaaggga
accggcaacatggaactgattctggaccgcaaattggcggaccgtcggctgtttcccgcc
attgatatccagcggtccggcacccggcgggaggatttactgttgaataaggaagaactg
gaatatgtttggagcctccgcagggccattaccagcatgtctcccattgaagccctggaa
aatcttttggatcgtatgaagcatacccgggtgaatgaagaactgctgtatgactttaaa
cccaaacccaggccccagcagcctgaagagcctgctaaatttatcaaaagaccttataaa
aggagaattgaagagcggggataa
DBGET
integrated database retrieval system
