Maridesulfovibrio salexigens: Desal_1179
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Entry
Desal_1179 CDS
T00969
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
dsa
Maridesulfovibrio salexigens
Pathway
dsa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dsa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Desal_1179
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dsa03021
]
Desal_1179
03400 DNA repair and recombination proteins [BR:
dsa03400
]
Desal_1179
Enzymes [BR:
dsa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Desal_1179
Transcription machinery [BR:
dsa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Desal_1179
DNA repair and recombination proteins [BR:
dsa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Desal_1179
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
ACS79242
UniProt:
C6C179
LinkDB
All DBs
Position
1308039..1312139
Genome browser
AA seq
1366 aa
AA seq
DB search
MGQLRKIFGKIKVTLPIPHLLELQVDSFKKFLQEGVAPASRADVGLEGVFRSVFPIEDFN
KTASLEYVSYDIGEPKYDMDECISKGLTYEAPIRIKVRLVVFDVDEETESRTIRDIKEQD
IYFGTVPLMSEQGTFIINGTERVIVNQLQRSPGIIFEHDSGKTHTSRKVLYSCRIIPMRG
SWLDFDFDHKDILYVRIDRRRKMPATVLLKAMGLSKQDILDYYYDVEEYQIDRHIVRRKV
VENQYRKENAWVDLCLEDGKVIVARDKQITKFGWKKLVRGGVEYIEVDPKSLVGQFAFND
ITDPDTGEVIAEAADEITEEIFERIQEVGLKDVKVLHTQGADVSSALRDSMMLDKTTDVE
SAQIEIYRRLRPSSPPTAEIAANFFENLFRSSDYYDLSSVGRYKLNARLNIETPLELRTL
TNEDILTAVKVLCKLKDSHGPADDIDNLGNRRVRPVGELVENQYRIGLVRMERAIKERMS
LQEVATLMPHDLINPKPVAAVLKEFFGTSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTR
ERAGFEVRDVHVSHYGRICPIETPEGPNIGLIVSLTTYSKVNDFGFIESPYRTIKDSTMT
DEILYYDATREVGHVVAQANAPIDEKGSFTNPLVTCRLNGDVSMHPREDATLMDISPSQT
VSVSAALIPFLEHDDANRALMGSNMQRQAVPLLKTSQPLVGTGMEANVAQDSGSCVLAEN
DGVIDYVDAERLVVRYDDGVYPDTGGVKHYELQKWHKSNQNSCYGQRPRLPIGTPVKKGD
VLADGPGIKDGELALGKNLLVAFMPWCGYNFEDSILISERVVKEDVFTSVHIEEFELVAR
DTKLGPEEVTRDIPNVSEEMLRNLDECGIIRLGARIAPDDILVGKITPKGETQLTPEEKL
LRAIFGDKARDVKNTSLKVPPGIEGTVVDVKVFNRRSGEKDDRTRNIEDFELAKHDMKES
KHIESLTNKTRVKIADVVANKQIAQTLMGRKKGEVLAEAGHIITDEILAEVPLKKLGGLF
ADKETNEAVKQLLAEYDKQIRIIKGIYDVKREKVTEGDDLPPGVIKMVKVYIAVKRKLSV
GDKMAGRHGNKGVVSNILPEQDMPFFDNGTPMDIVLNPLGVPSRMNIGQIMETHLGWAAL
ALGQKFAAMLDTGEALGVIRQEIKDTFESEDVYELIDSLDDEEFRLAVNKAREGIVTKTP
VFDGATEEEIWDLVGKTGIGDDGKVTLYDGRTGDPFHNRVTVGVMYILKLHHLVDEKIHA
RSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAYLLQEFLTVKSDDVTGRVKMY
EKIVKGDNFLEAGLPESFNVLVKELMSLGLDVNLLQDEVEETADKK
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atgggtcagctcagaaaaatatttggaaagatcaaagtcactctgccgattccccacctg
ctcgaactgcaggtggattccttcaaaaaattccttcaggaaggcgtagcccccgcaagc
cgggcggacgttggccttgaaggggtttttcgttcggtttttccgattgaggatttcaac
aaaactgctagcctcgaatatgtcagctacgacatcggcgagcctaaatacgatatggac
gagtgtatctccaaggggcttacttatgaagctcctatccgtatcaaggttcgtttggta
gtctttgacgttgatgaagagactgaaagcagaactatccgcgacattaaagagcaggat
atctacttcggaaccgtgccgctcatgagtgagcaggggactttcattataaatggtact
gaacgcgttatcgttaaccagcttcagcgttcccccggtattatcttcgaacacgattcc
ggtaaaactcataccagccgtaaggttctttacagttgccgcattattcctatgcgcggt
tcttggctggattttgacttcgaccacaaagacattctttatgtgcgtatcgaccgtcgc
cgcaaaatgcctgcgactgttctgctcaaggccatgggcctctccaagcaggatattctc
gactactactatgatgtggaagagtaccagatcgatcgtcacattgtgcgtcgcaaagtc
gttgaaaatcagtaccgcaaagaaaacgcatgggttgatctctgccttgaagacggcaaa
gttattgttgcccgtgataaacagatcactaagttcggctggaaaaagcttgtacgtggc
ggtgtagaatatattgaagtagatcctaagtctctcgtaggccagtttgctttcaatgat
attactgaccccgacacaggtgaagttattgctgaagccgctgacgagatcactgaagag
atctttgaacgtattcaggaagttggcctcaaagatgtcaaggtcctgcatactcagggt
gctgacgtttcttccgcactgcgcgattctatgatgctggacaaaacaactgatgttgag
tccgcacagattgaaatttaccgcagattgcgcccgagctctccgcctaccgctgagatt
gctgcgaacttctttgaaaacctgttccgcagctctgattactatgatctctccagcgtt
ggtcgttataagctgaacgcacgtctcaacatcgagactccccttgaactgcgcaccctg
accaatgaggatatcctcaccgcggttaaggttctttgcaaactcaaggatagccacggt
cccgctgacgatatcgataacctcggtaacagacgtgtccgtccggttggtgaactggtt
gaaaaccagtaccgcatcggtcttgttcgcatggaaagagccatcaaggagcgcatgagc
ctccaggaagtggcgaccctcatgcctcatgacctgatcaaccccaaaccggttgctgca
gtacttaaggaattctttggtacttctcagctttctcagttcatggaccagaccaacccg
ctttctgaagttacccacaagcgcagactttccgcgctgggacccggtggtctgactcgt
gagcgtgcaggcttcgaagttcgagatgttcacgtttctcattacggacgtatttgtcct
attgaaactcctgaaggtccgaacatcggtcttattgtttctctgacaacttactctaag
gtcaacgatttcggtttcattgaaagtccttaccggacaatcaaagactccaccatgacc
gacgagattttatattatgatgctactcgcgaagtaggacatgtagtcgcacaggctaac
gctcccattgacgaaaaaggatcatttaccaacccgctggtaacctgtcgtcttaacggt
gatgtatcaatgcacccccgtgaagatgcaacactcatggacatcagccccagtcagaca
gtttctgtttctgctgcgctgattcctttcctggagcatgatgatgcgaaccgcgcactc
atgggttccaacatgcagcgtcaggctgttccgttgctgaaaacttcccagcctctggtt
ggtaccggcatggaagcaaacgttgcacaggactccggtagttgtgttctcgctgagaac
gacggtgttatcgactacgttgatgctgagcgtctcgttgttcgttacgatgacggtgtt
tatcctgataccggcggtgtaaagcactacgaactccagaagtggcacaaatcaaaccag
aactcctgctacggtcagcgtcctcgtctgcctatcggaactcctgtcaagaaaggcgat
gtcctcgctgacggtcccggtatcaaagacggtgagctcgctcttggtaagaacttgctc
gtagcttttatgccctggtgcggatataactttgaggactccatcctcatttccgagcgt
gttgttaaggaagatgtgttcacctcagttcatattgaggaattcgaacttgtcgctcgt
gacaccaagcttggacccgaagaagttacccgcgatattcccaacgtgagtgaagaaatg
cttcgcaacctcgacgaatgcggtattattcgtcttggcgctcgcatcgctcctgacgat
attctcgtcggtaagatcactcctaaaggtgaaacccagcttactcccgaagaaaaattg
ctccgtgcaatcttcggtgataaagcacgcgatgtgaaaaacacatccctcaaggttccg
ccgggaattgaaggtaccgtagtcgacgttaaggtcttcaaccgccgttccggtgagaaa
gacgaccgtacccgcaatattgaggatttcgagcttgctaaacatgatatgaaagaaagc
aagcacatcgagtccctgaccaacaaaacccgcgtcaaaatcgcggatgtggtcgctaac
aagcagatcgcccagaccctcatgggtcgcaagaagggtgaggtacttgctgaagcagga
cacatcatcactgatgaaatccttgcagaagtaccccttaagaagttgggcggactcttt
gcagataaagaaaccaacgaagcagtcaaacagctgctcgctgaatacgacaagcagatt
cgcatcatcaaaggcatttatgatgtgaaacgcgaaaaagttaccgaaggtgatgatttg
cctccgggcgtaatcaagatggtcaaagtctacatcgctgttaagcgtaagcttagcgta
ggtgacaaaatggccggtcgtcacggtaacaagggtgttgtctccaacattctgcctgaa
caggatatgccgttcttcgacaacggtacccctatggacatcgtactgaacccgcttggt
gttccttcacgtatgaacatcggtcagatcatggaaactcaccttggttgggcagctctt
gctctcggtcagaagttcgcagcaatgcttgataccggtgaagccctcggcgttatccgt
caggaaattaaagataccttcgaatctgaagatgtctacgaactgattgattcactggat
gatgaagaattcagactggcagtcaacaaagcccgtgagggtattgtcaccaaaacccca
gtcttcgacggtgcgactgaagaagaaatctgggatctggttggcaagaccggaatcggg
gatgacggtaaagttaccctttacgacggacgtaccggtgatcctttccacaaccgtgta
accgtcggtgtaatgtacatcctcaagctgcatcaccttgttgatgaaaagattcacgct
cgctccaccggtccttactcgctggttacccagcagcctctcggcggtaaggctcagttt
ggtggtcagcgtctcggtgagatggaagtatgggctcttgaagcatacggcgcagcctac
ctgcttcaggaattcctgaccgtcaaatcagatgacgttaccggtcgtgttaagatgtac
gaaaagatcgtcaagggagataacttccttgaagccggcctgcctgaatcctttaacgtt
ctggtcaaggaacttatgtccctcggccttgatgttaacctgcttcaggatgaagtcgaa
gagactgccgacaagaaataa
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integrated database retrieval system
