Maridesulfovibrio salexigens: Desal_3406
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Entry
Desal_3406 CDS
T00969
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dsa
Maridesulfovibrio salexigens
Pathway
dsa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Desal_3406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsa03019
]
Desal_3406
03009 Ribosome biogenesis [BR:
dsa03009
]
Desal_3406
Enzymes [BR:
dsa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Desal_3406
Messenger RNA biogenesis [BR:
dsa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Desal_3406
Ribosome biogenesis [BR:
dsa03009
]
Prokaryotic type
rRNA helicases
Desal_3406
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
PWP3A-B_C
DUF6181
TrkA_N
Motif
Other DBs
NCBI-ProteinID:
ACS81455
UniProt:
C6BSJ9
LinkDB
All DBs
Position
3808834..3810387
Genome browser
AA seq
517 aa
AA seq
DB search
MTNSKDDQAAQKMHNESVHDEPDKVVEPEEALPEITKDELPPSILNALDKTGWDKLTPVQ
SKSLPYQLYNRDLMVQAKTGSGKTGAFVLPLLEKLDPNINYTQALILVPTRELARQVERE
AEKIFEGSGLRVLSVYGGVGYGHQREELEKGAHMVVGTPGRILDHLLKRTFDLEDLETLI
FDEADRMLSIGFYPDMREVKSYLPRRPISTYMFSATFPEHVIRLSKEFMYKPQMLSLSSK
QVHVTEIDHAYYEVPSMGKERQLMRILEMENPTSAIIFCNTKANVEFVTAVLNNFGFNAA
DLTSDLSQSKRERVLAQLRDGSVRFLVATDIAARGIDVPDLSHVIMYEPPEDKESYIHRA
GRTGRAGSSGVAISLVDVIQKIELQRIATAYNINFEIRELPDDKQVLETINERLTTILEG
KFRSRTILERERIGRYKDLVRQLAEDDEQCILVGMLLDELYQKSLHARAEQPPAPKPRPQ
RQSRPRKNNYRGKPKGGSSTNKGQNKGRSGNYNRNRR
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgaccaattcaaaagatgaccaagctgcacaaaaaatgcataacgaaagcgttcacgat
gaaccggataaagtagtagagccagaagaggccctcccggaaatcaccaaagacgaactc
cccccatccatactgaacgcccttgataaaacaggctgggacaaactcaccccggtccag
tcaaaatccctcccctaccagctttacaatagagacctcatggtgcaggccaagaccgga
agcggaaaaaccggcgcattcgtcctgcctttgctggaaaaactcgaccccaacatcaat
tatactcaagcactgatccttgtccccacacgagaacttgcacgacaggttgaacgcgaa
gctgaaaaaatttttgaaggctcaggattacgggttctttccgtttacggcggagtcggt
tacggtcatcagcgcgaagaactggaaaaaggggcacatatggttgtaggtaccccgggc
aggattctggaccacctgctcaaacgcacctttgaccttgaagacctcgaaaccctgatt
tttgatgaagcggaccgcatgttgtccatcggtttctacccggacatgcgcgaagttaaa
tcctacctgccgcgcagacctatttccacctacatgttctctgcaactttcccggaacac
gttatccgtctctccaaagagttcatgtacaagccgcagatgctcagcctgagcagcaaa
caggttcatgtaacagagattgaccacgcctattacgaagtgccttccatgggcaaggaa
cgccagctcatgcgcatccttgaaatggaaaatcccacctcggctatcattttctgtaac
accaaagccaacgtcgaatttgttacagcagtgctcaacaacttcggcttcaatgccgca
gatctgacctcggacctttcgcagtccaaacgcgaacgggttctggcccagctgcgtgac
ggatcagtgcgctttctcgtggcaacggacattgcagcgcgcggcatcgatgtaccggac
ctctcccacgtaatcatgtacgaaccgccggaagataaggaatcctacatccaccgtgcc
ggacgtacaggacgtgcaggatcttccggggtcgcaatctctcttgtggacgtaatccag
aagatagaactgcaacgcatcgctactgcctacaatattaattttgaaatacgcgaattg
ccggatgacaaacaggtactggaaacaatcaacgaaagactgaccacaatccttgaaggt
aaattccgttcacggacaatacttgaaagggaacgcatcggacgttataaagatctggtc
cgccagcttgccgaggatgacgaacaatgcatccttgtgggcatgcttctggacgaactc
taccagaaatccctgcacgcccgtgcagaacagcccccggcgcccaagcccagaccacag
agacaatcccgcccccgcaaaaataactaccgtggtaagccgaaaggcggaagctctaca
aataaaggtcagaacaagggccgcagcgggaactacaatcgcaaccgcagataa
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