Devosia salina: K1X15_08740
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Entry
K1X15_08740 CDS
T07996
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dsal
Devosia salina
Pathway
dsal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K1X15_08740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsal03019
]
K1X15_08740
03009 Ribosome biogenesis [BR:
dsal03009
]
K1X15_08740
Enzymes [BR:
dsal01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
K1X15_08740
Messenger RNA biogenesis [BR:
dsal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K1X15_08740
Ribosome biogenesis [BR:
dsal03009
]
Prokaryotic type
rRNA processing factors
K1X15_08740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
QYO78607
UniProt:
A0ABX8WP42
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All DBs
Position
1828398..1831076
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AA seq
892 aa
AA seq
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MATKRMLVDAIHPEETRIVVTAGNRLEEFDFESATRRQLRGNIYLAKVTRVEPSLQAAFV
EYGGNRHGFLAFSEIHPDYYQIPVADREALLRDEEHEDEHHDDTDDTVSLPEGVSEPDAE
ADPQEPGDAGHIEQAPANSEPVESIGGADALEEVPERRRSSQQRRHQYKIQEVIKRRQVM
LVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNAADRKRLKEITADLE
VPQGMGVILRTAGASRTKAEVKRDFEYLMRLWESVRTLTLESSAPCLVYEEGSLIKRTIR
DLYNKDIDEVLVAGDNAYREAKDFMKMIMPSHAKNVKPYGEEQPLFSKFGVENQLDQMFS
PTVTLPSGGYIVINPTEALVSIDVNSGRSTKEHNIEDTALQTNLEAAEEVARQLRLRDLA
GLIVIDFIDMMENRSNRAVERKLKDCLKDDRARIQVGRISHFGLMEMSRQRIRFGVVESS
THKCPICDGTGLVRSTESLALMIMRHIEDHVLRKQGQSINVRVPVEVALYILNYKRETLS
QLEMRNNLSITITADGKMTGHQFAIEKGEARVSAYADQRAAAHVRVDSAVIEDADEDEVE
AEVEEAEETEARSADQGEGEGSGRRRRRRRRRGGRNGDQPAQQASETGADAEADSDAEGE
DEDGSEDAAARQAVEGDGDGENRRRRRRGRRGGRRNRRDQNGETGSEAAEAAVSAPEDAV
IEHVEMNAGPETAEASAAEEKPAEKPKRTRRKKVTETEESAPAESAPVEAITTDETPAEP
AAEEKPKRKPRARKPKAEAAESAPEAAVSEAAPAKTRATRATKAAKAEEPAAEPAAEEKP
ARSRRVKKELPPEGVVVTSSASAPAAEEAEQPEGEPDKKKKVGWWQRRLGLG
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaagagaatgctggtggatgccatccacccggaagaaacacggattgtcgtt
accgccggtaaccggctcgaggaattcgacttcgaatcggcgacccgccgccagttgcgg
ggcaatatctacctcgcgaaagtcacgcgggttgagccgagcctgcaggcggcctttgtc
gaatatggcggcaaccgccacggcttcctcgccttttcggaaatccatcccgattactac
cagatccccgtggccgatcgcgaagccctcttgcgcgacgaggagcacgaggacgagcac
cacgacgacaccgacgacacggtttcgctgcccgagggcgtgagcgagcctgacgcggaa
gccgacccgcaggaaccgggcgacgccggccatatcgagcaagcccccgccaatagcgag
ccggtggaatccatcggtggtgccgatgcgctcgaggaagtgcccgagcgccgccggtcc
agccagcagcgccgccaccagtacaagatccaggaagtgattaagcgccgccaggtcatg
ctggtgcaggtcgtcaaggaagaacgcggcaataagggcgccgcgctcaccacctatctt
tcgctggccggacgctattccgtgctgatgcccaataccgcccgtggcggtggcatttcg
cgcaagatcaccaatgcggccgaccgcaagcgtttgaaggaaatcaccgccgacctggaa
gtgccgcagggcatgggcgtcatcctgcgcacggccggtgcctcgcgcaccaaggccgag
gtcaagcgcgacttcgaatatctgatgcgcctgtgggaaagcgtgcgcacgctgacgctg
gagagctcggcgccgtgcctcgtctatgaggaaggttcgctcatcaagcgcaccatccgc
gacctttacaacaaggacatcgatgaagttctcgtggcgggcgacaacgcctatcgcgag
gccaaggacttcatgaagatgatcatgccgtcccacgccaagaacgtgaagccttacggc
gaagagcagccccttttctccaagttcggcgtcgagaaccagctcgaccagatgttctcg
cccacagtcaccctgccctcgggcggctatatcgtcatcaacccgaccgaggcgctcgtt
tccatcgacgtgaactcgggccgctccaccaaggagcacaatatcgaagacaccgccctc
cagaccaatctggaagcggccgaggaagtggcccgccagctccgcctgcgcgatctggcc
ggcctcatcgtcatcgacttcatcgacatgatggagaaccggtcgaaccgagccgtcgag
cgcaagctcaaggattgcctcaaggacgatcgcgcccgcatccaggttggccggatatcc
catttcggcctcatggaaatgagccgccagcgcatccgcttcggcgtggtggaaagctcc
acccacaagtgcccgatctgcgatggcaccggtctcgtgcggtccaccgaaagcctggcg
ctgatgatcatgcgccacatcgaggatcacgtcctgcgcaagcagggccagtccatcaat
gtccgggtgcccgtggaagtggcgctctacatcctcaactacaagcgcgagaccctgtcg
cagcttgagatgcgcaacaacctctccatcaccatcactgccgatggcaagatgaccggt
caccagttcgccatcgaaaagggcgaggcccgggtctcggcctatgccgatcagcgtgcc
gccgcccatgtgcgggtcgacagtgccgtgatcgaggatgctgacgaggacgaggtcgaa
gccgaggtcgaagaggccgaggagaccgaagcccgttccgccgaccagggcgaaggggaa
ggcagtggccgccgccgccgtcgtcgtcgtcgtcgcggtggtcgcaatggcgatcagccc
gcgcagcaggcgtccgaaactggtgccgatgccgaagcggattccgacgccgaaggcgaa
gacgaggatggcagcgaggatgctgcggcccgccaggccgtcgagggtgatggcgatggc
gaaaaccgccgccgccgtcgtcgtggtcgccgcggtggccgccgcaatcgccgcgatcag
aatggcgagaccgggtccgaagccgcggaggccgcggtctcggcgccggaagacgccgtg
atcgagcatgtcgaaatgaacgccgggccggaaacggcagaagcgtctgcagccgaggaa
aagccggctgaaaagcccaagcgcacccgtcgcaagaaggttaccgaaaccgaggaatcg
gcgcctgccgaatccgcgccggttgaagcgatcaccaccgacgaaacgcccgctgaaccg
gctgccgaggaaaaaccgaagcgcaagccgcgtgcgcgcaagcccaaggccgaggccgca
gaatctgcgccagaggcagcggtctccgaggccgcgccggccaagaccagggctacgagg
gcaaccaaggccgccaaggcggaagaacctgccgctgagcccgctgccgaggagaagccg
gcccgctcgcgccgcgtcaagaaggaactaccgcccgaaggcgtggtggtgacctccagc
gcctccgcgcctgctgccgaggaggccgaacagcccgaaggcgagccggacaagaagaag
aaggtcggctggtggcagcgccgcctcggcctcggctag
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