Devosia salina: K1X15_09100
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Entry
K1X15_09100 CDS
T07996
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dsal
Devosia salina
Pathway
dsal03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dsal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K1X15_09100 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dsal03400
]
K1X15_09100 (mfd)
Enzymes [BR:
dsal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K1X15_09100 (mfd)
DNA repair and recombination proteins [BR:
dsal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K1X15_09100 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
SecA_DEAD
RecG_dom3_C
AAA_25
AAA_16
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QYO78673
LinkDB
All DBs
Position
complement(1894315..1897803)
Genome browser
AA seq
1162 aa
AA seq
DB search
MNEMSGVKPSLRTISNVPDGMQPMVLAQLVERRLKDAPDDAASLVFVARDGRRMQRMAEV
LGAILPGHTILTLPAWDCLPYDRVSPNTVTIAARMNALAALTSGAKGAVVLTAVNALIQK
LPPRDLVETMSFSAAVGRMVDSDKLIAWAANNGYLRVPTVRESGEFAVRGGLVDLFPAGS
DAPLRFDFFGSQLESIRTFDPDSQRTTGTLKRIDLTPMSEVVLNEETIRRFRQNYTAAFG
GNTVDDTLYASVSGGSRYSGTEHWLPFFYDHMDRLADYVGDAPFVFDDQVGEAFVERAEQ
VRDYYEAREAARLAPKVAGAGAPYKPIRPELLYDLDATPTALAGASVIQFSQFLSPTADG
SDDAGGHIAPSFAAERAASDVNLFQAVVDRLLAERRNGRRAIIACWSAGTRDRMAQVLKD
HGLTNPRLAENWRDAETTSAATTSLVVLPLETGFETKYLLVLSEQDILGERILRPQRKKK
ASDALTEAASLSAGDLVVHVDHGIGRFIGLKVIEAGGAPHECVELQYAGDTKLYLPVENI
ELLTRYGSDDASVALDKLGGVAWQAKKGKLKKRIREMAEQLIKLAAQRLLTKADVVDINA
GAYDEFAARFPYEETEDQLNAIEAVFDDISSGKVMDRLVCGDVGFGKTEVALRAAFAVAL
SGKQVAVVVPTTLLARQHFKTFSERFQGLPVRVRHASRMVPANELKATKDGLADGQVDIV
VGTHALLSKSIKFKDLGLLIIDEEQHFGVGHKERLKELKANVHVLTLTATPIPRTLQLAL
TGVRDLSLLATPPVDRLAIRTFISPFDPLSIREALLREKYRGGQSFYVVPRIKDQPDIAE
FLRQQVPEVSFVVANGQMPPGELDDIMNAFYDNKFDVLLATTIVESGLDIPNANTLIVHR
ADQFGLAQLYQIRGRIGRAKQRAYALFTVPPDRKLTDTAERRLGVLQSLESLGAGFQLAS
HDLDIRGAGNLLGDEQSGHIREVGYELYQAMLEEAVANLKSGEEEYEDRNEWSPQISLGM
PVMIPEHYVPDLQLRMQLYRKLGDLTDIRDIDAAGAELIDRFGPLPEEVEALLKVILVKS
LCRQANVEKVDAGPKGAVITLRNNEFPNPAGLVRMVSDLSNQVRIKPDQKLVFARNWPTA
EQRLKGAAAILSKLAKLAETGV
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaatgtccggcgtgaaaccgtcgctccgcacaatttccaatgtgccggacggc
atgcagcccatggtgctggcgcaactggtcgagcgacgtctcaaagacgcgccagacgac
gcggcgagcctcgtctttgtggcgcgggacgggcggcgcatgcagcgcatggcagaggtg
ctgggggcgattctgccgggccacaccatcctcacgctgccagcctgggactgcctgccc
tatgaccgggtttcgccaaacacggtgaccattgccgcgcggatgaacgcgctggcggcg
ctgaccagtggggccaagggtgcggtggtactgactgcggtcaatgcgctgatccagaag
ctgcccccgcgcgacctggtcgagaccatgagcttttcggctgcggtcggccggatggtg
gatagcgacaagctgatcgcctgggctgcaaacaacggctatttgcgggtgccgacggtg
cgcgagagcggagagttcgccgtgcgcggcggactggtcgaccttttcccggccggctcg
gatgccccgctgcggttcgactttttcggcagccagctcgaatcgatccgaactttcgat
ccggacagccagcgcacgaccggcacgctcaagcgcatcgacctgacgccgatgagcgaa
gtggtgctcaatgaagaaaccatccggcggttccggcagaattacaccgctgcgttcggc
ggcaataccgttgacgatacgctctatgcatccgtgagcggcggctcccgatattcgggc
acggagcactggctgccgttcttctacgatcacatggaccggctggcggactatgtgggc
gatgcgccattcgtgttcgacgaccaggtgggcgaggcctttgtcgaacgcgccgaacag
gtgcgagattactacgaggcgcgagaggctgcgcgcctggcgccgaaggttgccggggcg
ggggcaccctataagcccatcaggccggaactgctttatgacctggacgccacgccgacg
gcgcttgccggtgcctcggtcatccagttctcgcaatttctttcgcccactgcggacggt
agcgacgatgcgggcgggcatatcgcacccagctttgccgccgagcgtgcggcatcggac
gtcaacctgttccaggcggtcgtggacagattgctggcggagcgtcgcaatggtcgccgg
gccatcatcgcctgttggagcgcggggacgcgcgatcgcatggcccaggttctcaaggac
catggcctcaccaatccgcgcctggccgaaaactggcgcgatgcggagaccacgagtgcc
gcgacgacgtcactggtcgtgttgccactcgagaccgggttcgagaccaagtatctgctc
gttctgtccgaacaggacattctgggcgagcgcatcctcaggccgcagcgcaagaagaag
gcctcggacgccctgacggaggcagcgagcctttctgccggcgaccttgtcgtgcatgtc
gaccacggcattggccggttcatcgggctcaaggtgatcgaggcgggcggggcgccacat
gaatgcgtcgagctgcaatatgccggcgacaccaagctctatctgccggtcgaaaacatc
gaactgctgacccgctatggctcggacgatgcgtccgtggcgctggacaagctgggcggt
gtcgcctggcaggccaagaagggtaagctcaagaagcgcatccgcgagatggcggagcag
ctcatcaagctggcggcacagcgcctgctgaccaaggccgatgtggtggatatcaatgcc
ggcgcttatgacgagttcgcggcgcgcttcccctatgaagaaaccgaggaccaattgaat
gccatcgaggcggtcttcgacgacatttcctcgggcaaggtcatggatcggctcgtctgc
ggtgacgtgggctttggcaagaccgaagtggcgctgcgagcggccttcgccgtggcgctc
agcggcaagcaggtggcggttgtcgtgccgacgacgctgctggcgcggcagcacttcaag
acgttctctgagcgcttccaggggctgcccgtgcgggtgcgccatgcttcgcgcatggta
cccgccaatgagctcaaggccaccaaggacgggctggccgacgggcaggtggacattgtg
gtgggcacgcatgccctgctgagcaaatccatcaagttcaaggatctggggctgctgatc
atcgacgaggagcagcatttcggcgtgggtcacaaggagcgcctgaaagaacttaaggcc
aatgtgcatgtgctgacgctgacggcgacgccgatcccgcgcacactgcagctggcgctg
actggggtgcgggatctgtcactgctggcgacgccgccggtggatcgactggcgatccga
accttcatttcgccgtttgacccgctctcgatccgcgaggcgctgttgcgcgaaaaatat
cgtggcggacaaagcttctacgtcgtgccgcggatcaaggaccaaccggacattgccgag
ttcttgcggcagcaggtgccggaagtgtcattcgtggttgccaatggccagatgccgccg
ggtgaactcgacgacatcatgaatgccttctacgacaacaagttcgacgtgttgctggcg
acgaccatcgttgaatccggcctcgacattccgaacgccaatacgctgatcgtgcatcgc
gcggaccagttcgggctggcgcagctctatcagatccgcggccgcattggtcgggccaag
cagcgtgcctatgcgctgttcacggtgccgccggaccgcaagctgaccgatacggccgag
cggcggctgggtgtgctgcaatcactcgagagcctgggggcgggcttccagctcgccagc
cacgatctcgacattcgcggcgccggcaatctgctgggcgacgagcagtcgggccatatc
cgcgaagtgggctacgaactctaccaggccatgctggaggaggcggttgccaacctcaaa
tcgggcgaggaagagtacgaggaccgcaacgagtggagcccgcagatctcgctgggcatg
ccggtgatgattcccgagcactatgtgcctgaccttcagttgcgcatgcagctctatcgc
aagctgggcgacctcaccgatatccgcgacatcgacgccgctggcgcggagctgatcgat
cggttcggaccactgcccgaggaggtcgaggcgctactcaaggtgatcctggttaaatcg
ctctgccggcaggccaatgtcgagaaggtcgatgccggccccaagggggctgtcattacc
ctgcggaacaacgaattccccaatcccgcagggctggtgcggatggtgagcgatctttcc
aaccaggtgcgcatcaagcccgatcagaaactcgtgttcgcgcgcaattggcccacggcc
gaacagcgtctcaagggggcagcggcaatcctctcaaagctcgcaaaactggcagaaacc
ggggtctga
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