Desulfovibrio subterraneus: LN040_00935
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Entry
LN040_00935 CDS
T08953
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dsb
Desulfovibrio subterraneus
Pathway
dsb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LN040_00935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsb03019
]
LN040_00935
Enzymes [BR:
dsb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LN040_00935
Messenger RNA biogenesis [BR:
dsb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LN040_00935
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_22
ResIII
AAA_19
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WBF67706
LinkDB
All DBs
Position
202324..203856
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AA seq
510 aa
AA seq
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MLRDNVRHASWSVAAAFSDPDGTNTVHGVAQVSFTRLALHQSLLEAVEEQGFIAPTPIQE
RAIPPAMEGRDVLGLAQTGTGKTAAFVLPLLHRLVEGPRNVIRALIVAPTRELAGQIHED
IRVLGRRARLRSVAVYGGVGFHGQVMQMRGGVEILVACPGRLLDHVRQGSVDLSAVEVLV
LDEADMMFDMGFLEDVHEILRLTSGRNQTLMFSATMPGPVRALADKCMRDPVLVEVDIST
PAETVTHSLYPVAQHLKTPLLKTMLRTLGYDSMLVFTRTRHGARRLWQQLGKGGFNVTCL
QGNLSQRRRQAALDGFKRGKFAIMVATDIAARGLDISSISHVINYDFPPSVDTYIHRIGR
TGRASRTGMALTFVTPEDEAMVRTLERAMEESLDRCYLPRFDYSEQQRSAEARPAKIRRV
PRPRRMARAFMPTQVETEPAEPLKNQRPPRQPAPNPAQVRVISRPQAKPAPAPEKAEMRP
ASRAVPKQAPAPRGPRHATQDGRDAPEQEE
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgttgcgcgacaatgtccgccatgcttcgtggagtgttgcggcagcgttttccgatccg
gatggcacgaataccgttcatggggttgcacaggtgagtttcacccgtttggcattgcat
cagtcgctgcttgaagcagtggaagaacaggggttcatagcccccacgcccattcaggaa
cgtgccattcctccggcaatggaaggacgcgacgtgctcgggctggcccagaccggaacc
ggcaagacggcggcctttgtgctgccgcttctgcacaggctggtggaaggcccgcgcaat
gttattcgtgcgctcatcgttgcccccacccgcgagcttgcaggccagattcatgaagat
atccgggtgctcggccgcagggcacgcctgcgtagcgtggccgtgtatggcggggtagga
ttccacggtcaggtcatgcagatgcgcggcggcgtggagattcttgtggcctgtcccggg
cgcctgctcgatcacgtgcggcaggggtctgtggacctttccgccgttgaagtgctggtg
ctggacgaggcggacatgatgttcgacatgggatttctggaagacgtgcacgagattctc
cgccttacttccggcagaaatcagaccctgatgttttccgccaccatgccggggcctgtc
cgcgctctggcagacaaatgcatgcgcgatcccgttctggtggaggtggatatatctacc
cccgccgagactgtgacccactctctctatcctgtcgcacaacatctcaagacaccgctg
ctcaagaccatgctgcggacgctgggatatgattccatgctggtgttcacaagaactcgc
cacggggcaagacggttgtggcagcagctgggcaagggcggcttcaacgtcacctgcctg
cagggcaatctttcgcagcgcaggcggcaggccgcgctggacggtttcaaacgcggcaag
ttcgccatcatggtggcaacagatatagctgcgcgcgggctggacatctcttcaatttcc
cacgtcataaattacgattttcccccttcggtggatacgtatatccatcgcatcgggcgc
acgggcagggcaagccgcacaggcatggcgctgactttcgtgacccctgaagatgaagcc
atggtacgcacactggagcgtgccatggaagagtcgctggaccgttgctacctgcctcgt
ttcgactacagtgagcagcagcgcagcgcagaggcgcgaccggccaagataaggcgtgtt
ccgcgtccgagacgtatggcacgagcttttatgcccacacaggtggaaaccgaaccggcg
gaaccgctcaaaaatcagcggccgccccgccagcctgctcccaatccggcacaggtgcgt
gtcatatcaaggccgcaggcaaaacctgctccggctcccgaaaaggcggagatgcgccct
gcttcgcgtgcggttcccaagcaggctccggcaccgcgtggtccgcgtcatgcgacacag
gatggtcgcgatgccccggagcaggaagagtag
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