Desulfovibrio subterraneus: LN040_01235
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Entry
LN040_01235 CDS
T08953
Name
(GenBank) HD domain-containing protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
dsb
Desulfovibrio subterraneus
Brite
KEGG Orthology (KO) [BR:
dsb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsb03019
]
LN040_01235
Messenger RNA biogenesis [BR:
dsb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LN040_01235
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
tRNA_anti-codon
TraI_2
Cas3_HD
Motif
Other DBs
NCBI-ProteinID:
WBF67759
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All DBs
Position
267670..268710
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AA seq
346 aa
AA seq
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MQKIQFIRDISANDEVASIFAVTLAAQGQARNGPFWRLELADASGSVGAKVWSPLSQQFA
SITAGMLVSVRGRAATFRDQLDINIEALHILTEEEMAALDMGDFMPASERHPDDMMADLM
QLCRVTFTHKPWLKFLSAVFKDEEILRRFKTAIGAKNVHHAYAGGLLEHTLSVSELCMRL
CDHYPELDRQVLLAGAIFHDIGKAWELSGGIANDYTDEGRLIGHISIGLEKAEPYLLKSG
LEPELVMHFKHLVLGHHGTKEWGSPVLPATPEALVLHYADNIDAKLAQVRGLFADFAGDV
TGWTPYQTTLGRHMYKPARTPEPETKQAAKREVAREIPKEDQCSLL
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaaattcaattcattcgcgatatatcggccaatgacgaagtggcatcgattttt
gccgtcactctggcggcacagggacaggcgcgcaacggcccgttctggcggcttgagctg
gcagatgcctcgggttccgtgggggccaaggtgtggagtccgctcagccagcagtttgcc
agcataaccgcaggaatgctcgtttccgtgcgcggccgcgcggccactttccgcgatcag
ctcgacataaacatcgaagccctgcatattcttacggaagaagaaatggcagcgcttgat
atgggcgacttcatgcccgcatcagagcggcatcccgatgacatgatggccgacctgatg
cagctgtgccgtgttaccttcacgcacaaaccgtggctcaaatttctgagcgccgtcttc
aaggatgaagaaatcctgcggcgcttcaaaaccgccatcggggccaagaacgtgcaccat
gcctatgcgggtggtctgcttgagcatacgctttccgtcagcgagctgtgcatgcgtctt
tgcgaccattatcccgaactggaccgacaagtactgctggcaggagccattttccatgat
ataggaaaggcgtgggaactctccggcggcattgccaacgattacacggacgaggggcgc
ctcatagggcatataagcatcgggctggaaaaggcggaaccgtatctgctgaagtccggg
ctggagcctgaactggtcatgcatttcaagcatctggtgcttggccaccatggcacgaaa
gaatggggttcgcccgtattgcccgccacgcccgaggcgctggtgctgcattacgccgac
aacatcgatgccaagctggcgcaggtgcgcggccttttcgccgactttgccggagatgtc
actggctggacaccgtaccagacaacgcttggcaggcacatgtacaagcccgctcgtacc
cccgaaccggaaacgaaacaggctgctaaacgcgaggttgctcgcgagattcccaaggaa
gaccaatgttcattactctag
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