Desulfovibrio subterraneus: LN040_02385
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Entry
LN040_02385 CDS
T08953
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
dsb
Desulfovibrio subterraneus
Pathway
dsb02020
Two-component system
dsb02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
dsb00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LN040_02385 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LN040_02385 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dsb03021
]
LN040_02385 (rpoN)
Transcription machinery [BR:
dsb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LN040_02385 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
MutS_III
Motif
Other DBs
NCBI-ProteinID:
WBF67979
LinkDB
All DBs
Position
535372..536796
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AA seq
474 aa
AA seq
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MALELRQQLKLSQQLVMTPQLQQAIKLLQLSRLELMETVQQELLENPFLEESPESLVPAD
ATEKAELRSEAQEGYDKELASNADWEDYLGDFSSTTKQVASRETEIPEEGSSFEARLSSR
PSLDGHLFWQLTLSRVTERQQGIGEIIIGNIGSNGYLHASVQEMAEMAGAEVEEVEEMLH
RVQRFDPVGVAARSPQECLLVQIEVLGYDRDPVLVELVRDHLEDLEKRRYKPLCRKFRIN
MDDLREYLELIQTLDPMPGASFGTSEPHYVAPDVFVHKYDGEFVIILNDDGLPSLQLSDI
IDTLPQVSGPDKDYFQEKMRSASWLIKSLHQRQRTLYKVMESIVKYQRGFFEEGVTALKP
LILKDIADDIGMHESTVSRITTSKYVATPHGIFELKFFFNSAIGMDDGSSVGSESVKALI
KQLISEENSKRPLSDERIGEILKEKLQLNIARRTVAKYRTAMDIPSSSKRKSAF
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atggcacttgaactccgtcagcaactaaagctctctcagcaattggtcatgactccccaa
ttgcagcaggcaatcaaactgctgcaattgtcccgtcttgaactcatggagactgttcag
caggaactgctcgagaatccgtttcttgaagaatcccctgaatcgctggttccggcagat
gctacggaaaaggctgaacttcgatccgaggctcaggaaggatatgacaaggaactggcc
tccaatgccgactgggaagactatctcggcgatttttcaagcaccaccaaacaagttgcc
tcccgcgaaaccgaaatccctgaagaaggttcttccttcgaagcccgcttatcttcacgc
ccttcacttgacggccacctcttctggcaattgaccctttcccgggtgaccgaacgccag
cagggcatcggcgaaatcattatcggcaacataggttccaacggttatctgcatgcttca
gtgcaggaaatggctgaaatggccggtgccgaggtggaagaggtggaagagatgctgcac
agggttcagcgtttcgaccctgtcggtgtggccgcccgttctcctcaggaatgtctgctc
gttcagatagaggtgcttggctacgatcgtgaccccgtgcttgtcgaattggtacgtgat
catctggaagatctggagaaacgccgctataagcccctgtgccgcaagttccggatcaat
atggatgacctcagggaatatcttgagcttatccagacgctggaccccatgccgggtgcc
agtttcggcaccagtgaaccgcactatgtggctccggacgtgttcgtgcacaagtatgac
ggcgaatttgtcatcattttaaacgacgacgggttgcccagtcttcagctgagtgatatt
attgatacccttcctcaggtttccggacctgacaaggactacttccaggagaaaatgcgt
tctgcgtcctggctcataaagagcctgcatcagaggcagcgcacactctacaaggttatg
gagagtatcgtaaaatatcagcgcggattttttgaagagggtgtcacggctttaaagcct
ctgattctcaaggacattgcagacgatatcggtatgcacgagtccacggtgagccgaatt
accaccagcaagtacgtggcaacccctcatggtatttttgaactcaagttcttctttaac
agtgccatcggcatggatgatggcagttctgtgggctcggagagcgtcaaagcgctcatc
aagcagctgatcagcgaggaaaattccaagcgtcctctgagtgatgagcgtatcggtgaa
attctcaaagaaaaattacaattgaatattgcccgcagaaccgttgcgaagtatcgtaca
gctatggacatcccctcatcgtccaagcggaagtccgctttttaa
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