Desulfovibrio subterraneus: LN040_02435
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Entry
LN040_02435 CDS
T08953
Name
(GenBank) pyruvate carboxylase
KO
K01958
pyruvate carboxylase [EC:
6.4.1.1
]
Organism
dsb
Desulfovibrio subterraneus
Pathway
dsb00020
Citrate cycle (TCA cycle)
dsb00620
Pyruvate metabolism
dsb00720
Other carbon fixation pathways
dsb01100
Metabolic pathways
dsb01120
Microbial metabolism in diverse environments
dsb01200
Carbon metabolism
dsb01230
Biosynthesis of amino acids
Brite
KEGG Orthology (KO) [BR:
dsb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
LN040_02435
00620 Pyruvate metabolism
LN040_02435
09102 Energy metabolism
00720 Other carbon fixation pathways
LN040_02435
Enzymes [BR:
dsb01000
]
6. Ligases
6.4 Forming carbon-carbon bonds
6.4.1 Ligases that form carbon-carbon bonds (only sub-subclass identified to date)
6.4.1.1 pyruvate carboxylase
LN040_02435
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Gene cluster
GFIT
Motif
Pfam:
CPSase_L_D2
PYC_OADA
Biotin_carb_C
Biotin_carb_N
Dala_Dala_lig_C
ATP-grasp
Biotin_lipoyl
HMGL-like
ATP-grasp_3
GARS_A
RimK
NQRA_N
ATPgrasp_Ter
DUF7477
Motif
Other DBs
NCBI-ProteinID:
WBF67988
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Position
543791..547504
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AA seq
1237 aa
AA seq
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MANKTFHQVLDEVKGKPILVANRGIPARRICRSIRERFDGIAIMTATDVDKTSPAASAAQ
ELMLLGKDPRGYLDIDRIIDLAKKRGVVAIHPGWGFASEDDAFPKRCAEEGIIFIGSSAE
AMNLLGNKVQVRKIAKKIGVPVVPGSEGAVDVPLARQLAEEIGFPIMLKAEGGGGGRGIF
LVQNQDELESAFTKASTMAQASFGNPRVYVEKYLASVRHIEIQVIADKYGNVFAFDERDC
TVQRNHQKLVEITPSPSPLITPELRAQLKEYSRKLVLEVGYDSLATVEFLVTADGTPYLI
EVNTRLQVEHGITECRYGIDLVEEQIAVAFGAELRLTEEGCPPAQWAMQLRINCEDPQAS
FSPNCGVISRYVSPGGPGIRIDSNLSAGYEFPSNYDSAGALLIAYGRGWNKVLGTIERAL
NEYAIGGVKTTIPFFKQVIKHPKFRDASYDTNFIAKTPELLCYTDVAPEAVRLSRLIAGI
SAKGYNPHVLLGEYRTPETPRVGNGRFDPVLPAVPSKLLKSEPPYPRGDRKALLDFVRDS
DYVHFCDTTPRDITQSNSGNRFRLAEDMLIAPHLDNCGFFSIENGGGAHFHVAMMANMTY
PFNEAEQWNRVAPKTLKQILIRSTNVLGYKPQPRNLMRLTGEMICDHYQIIRCFDFLNHV
DNMRPFAEVALSRKEVVFEPAISLSWAKGFDVDHYIGVTSAILRMVGEVAGVGESKASEL
IILGLKDMAGVCPPRFISALVAALRTKWPRLVLHYHRHYTDGLFVPSVGAAAKAGAHIVD
TGIGAAVRWYGQGEVLSTAAYIEDELGLKTNLNKDMIRECNFVLKQIMPYYDRYTTPFFQ
GIDHDVVEHGMPGGATSSSQEGAMKQGYIHLLPYMLKFLAGTRKIVRYHDVTPGSQITWN
TAFLAVSSAYKRGGENEVKYLLSVLDEVNKMDACQDCQAELAEARLALYQDSNDAFRDLL
LGKFGKLPLGFPPDWVYQSAFGDEWKQAIASRTEQSPLETLKDIDLVSEEKSYIEHMKRK
PTDEEFVMYLNHPADALKTVQFRNEFGNPNQVPLDVWFEGLELGRELQFVDSNKKPHTMT
ILHKTSPDKSGKSVVRYVLDSEILSYDVQVALPQEEEGIGYEKADKNNTNHVAAPSNGDL
WVMYVHPGDLVKKGEELFNISIMKQEKAVLAPADGMVVRVLKTADFKENKVMVPVKEGEL
LVELGPVPRRCPNEACQRPLTIEGGGFCPFCGVKLEA
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atggccaataagacgtttcatcaagtattggacgaagtgaagggcaagcctattctggtt
gccaaccgcggtattcccgcacgccgcatctgtcgttccattcgtgagcggttcgatgga
atcgccatcatgactgcgactgacgtcgataaaacgtctccggccgcctctgccgcgcag
gagctcatgctcctcggcaaagatcccagagggtatctggacatagaccggataatcgac
ctcgccaagaagcgcggtgttgttgctattcatcccggctggggctttgcctccgaagac
gacgccttccccaagcgctgtgctgaagaaggcatcatcttcataggttcttccgccgag
gccatgaacctgctcggcaacaaggtacaggtccgcaagatcgccaagaagatcggcgtt
cccgtggttcccggctctgaaggagctgtggacgtacctcttgcccgtcagcttgcagaa
gagatcggcttccccatcatgctcaaggctgagggtggcgggggcggtcgcggcatcttc
ctcgtgcagaatcaggacgaactggaatccgccttcaccaaggcttccaccatggctcag
gcatcttttggcaacccccgcgtgtatgtcgaaaagtatctggcctccgtccgtcatatc
gaaattcaggtcattgccgacaaatacggcaacgtgttcgcctttgacgaacgcgactgc
accgtgcagcgtaaccaccagaagctggttgaaatcacgccttctccctcgccgctcatc
acgcccgaactgcgtgcacagctcaaggaatattcccgcaagctggtgcttgaagtgggc
tatgattctctggcgacggttgaattcctcgttaccgctgacggcaccccctatcttatt
gaagtaaacacccgcctgcaggtggaacacggcattacggaatgccgctatggcatcgat
cttgtggaagagcagatcgccgttgcctttggcgcggaactgcgtcttactgaagaaggc
tgcccgcccgctcagtgggccatgcagcttcgcattaactgcgaagacccgcaggccagc
ttctcgcccaactgtggcgtgatctcccgttacgtatcgcccggcggccccggtatccgc
atcgactccaacctttccgcagggtatgagtttccttccaactacgactcggcaggagcg
ctgctcatcgcttatggtcgcggctggaacaaggtgctgggtaccattgaacgtgcgctg
aacgaatacgctatcggcggcgtgaagacgaccattcccttcttcaagcaggtcataaag
catcccaagttccgtgatgcttcctatgataccaacttcattgccaagacccccgagctt
ctctgctacaccgacgtggctccggaagccgtgcgtctttcccggctcatcgccggtatc
agcgcaaaggggtacaacccgcacgttctgctgggtgaataccgcacgccggagactccc
cgcgtcggcaacggcaggttcgatcctgttctgcccgccgtgccctcaaagctgctgaag
agcgaaccgccttatccccgcggcgaccgcaaagccctgctggatttcgtgcgtgattcc
gactacgtgcacttctgcgacaccacgccgcgcgacatcacgcagtccaactccggtaac
cgtttccgtctggcagaagacatgctcattgccccgcatcttgacaactgcggattcttc
tccattgaaaacggcggcggagcgcacttccacgtggccatgatggccaacatgacctat
cccttcaacgaagcggagcagtggaacagggtcgcccccaagacgttgaagcagattctc
atccgctccaccaacgtactgggctacaagccccagccgcgtaatctcatgcgcctgacc
ggtgaaatgatctgtgatcattaccagatcatccgctgtttcgacttcctgaaccacgtg
gacaacatgcgtccctttgccgaagtggctctgagcagaaaggaagtggtgtttgaaccc
gccatttctctttcgtgggccaagggcttcgacgtggaccactacattggcgtgacctcc
gccatcctgcgcatggtgggtgaagttgccggagtaggggagagcaaggccagcgaactc
atcattctcggcctcaaggacatggcaggcgtatgcccgccccgctttatctccgctctt
gttgccgcactgcgcacgaagtggcccaggctggttctgcattaccacaggcattacacc
gacggtctgttcgttccttccgtgggtgcggctgcaaaggcgggtgcgcatatcgtggat
accggcatcggcgcggctgtccgctggtacggtcagggcgaagtgctttccactgccgca
tatattgaagacgaactcggtctcaagaccaatctcaacaaggacatgatccgcgagtgc
aacttcgtgctcaagcagatcatgccgtactacgaccgttacaccacgcccttcttccag
ggtatagaccacgatgtggtggaacacggcatgcccggcggcgctacctcctcttcgcag
gaaggtgccatgaagcaggggtatatccacctgctgccctacatgctcaagttccttgcc
ggaacccgcaagatcgtgcgctaccacgatgttacccccggctcacagattacctggaac
acggcatttctcgcggtttccagcgcctacaagcgcggtggcgagaacgaggtgaagtac
cttctgagtgtgctggacgaagtgaacaagatggatgcctgtcaggattgtcaggctgag
cttgcagaagcacgtcttgctctgtatcaggacagcaacgatgcattccgcgatttgctg
ctcggcaagttcggcaaactgccgctcggtttcccgcccgactgggtctaccagagtgcg
tttggcgatgaatggaagcaggccattgcttcccgcaccgaacagtctccgctggaaaca
ctcaaggatatcgacctcgtttccgaagagaagagctatattgagcacatgaagcgcaag
cccacggatgaagagttcgtcatgtatctcaaccatcccgcggatgcgctcaagaccgtg
cagttccgtaacgagttcggcaaccccaatcaggtgccgctggatgtatggtttgaggga
cttgagcttggccgcgaactgcagtttgtggacagcaacaagaagccccacaccatgacc
attctgcacaagacgtctccggacaaatccggtaagagtgttgtacgttacgtgctcgat
tccgaaatcctcagctacgacgttcaggtcgcgctgccgcaggaagaagagggcatcggt
tacgaaaaggccgataagaataacaccaaccacgtggccgccccctccaacggcgacctc
tgggtcatgtatgttcaccccggcgacctggtgaagaagggtgaagaactcttcaacatc
tccatcatgaagcaggaaaaggctgtactggctcctgccgacggcatggtggtaagagtg
ctcaagacagcggacttcaaggaaaacaaggtcatggttcccgtcaaggaaggggagctg
cttgtggaacttggccctgtaccccgccgctgtcccaacgaggcgtgccagcgtcctctg
accattgaaggcggtggtttctgccccttctgcggtgtgaaactggaagcgtaa
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