Desulfovibrio subterraneus: LN040_03115
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Entry
LN040_03115 CDS
T08953
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
dsb
Desulfovibrio subterraneus
Pathway
dsb02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
dsb00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LN040_03115 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dsb03021
]
LN040_03115 (rpoD)
Transcription machinery [BR:
dsb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LN040_03115 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
WBF68113
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All DBs
Position
complement(697001..698770)
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AA seq
589 aa
AA seq
DB search
MGNIKDIQQIKTLIAKGKVSGFLTFDEVNKALPAEVNTPEQIEEIIGIFDQLDIAIVDTE
KEGKAIAVTPSESDEDAGEVDIELTDDEDSADYATRSTDPVRMYLREMGAVPLLDRDGEV
VIAKKIEMGEQDVLYALVEVPVAVEELIHVGDDLKDNRIKLKDVVKTIEEDDPSEDELNQ
RERVIKLLDEIKSVYKKRKKIYLKLDECATLDKRVAGLQKEIISYKEEIVLRLRDIKLEK
TLIDRIIETVEDYVRQMHNCQRDLSAYILSTGKTQVDIQTLFSKLEEREINPVVAADELG
LTVEELFSFKEMIIGKIEILKRLQEKCCHNVTDLEEVLWRIKRGNSAAMRAKQELIRSNL
RLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIA
DQARTIRIPVHMIETINKLIRTSRYLVQELGRDPTPEEIAERMDYPIDKVKKVLKIAKEP
ISLETPIGDEEDSSLGDFIEDKKAVAPSEEVVNTKLGEQIASVLADLTPREEQVLRKRFG
IGEKSDHTLEEVGKLFNVTRERIRQIEAKALRKLRHPVRSQTLRSYYES
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atggggaatattaaggacatccagcagatcaaaaccctcatcgccaagggtaaggtcagc
ggttttctgacttttgatgaagtcaacaaggccctgcctgccgaggtcaacacccctgag
cagattgaagagatcatcggcatctttgaccagctcgacattgcgattgtcgacacggaa
aaagaaggcaaagccattgccgtgactcccagcgaatctgacgaagacgcgggcgaagtt
gatattgaactgactgacgatgaagattctgccgattacgccacccgcagcacggacccc
gtgcgcatgtatctgcgggaaatgggggctgtgcccctgctggaccgcgacggtgaagtt
gtcatcgccaagaagatagaaatgggcgagcaggacgttctgtacgcccttgttgaagtg
cctgtggctgttgaagaactcattcacgtgggcgacgatctcaaggataaccgcatcaag
ttgaaagatgtggttaaaaccattgaggaagacgaccccagtgaagatgagctgaaccag
cgcgagcgcgtcataaaactgcttgatgaaatcaagtcggtctacaagaagcgaaagaag
atctatctgaagctggatgaatgtgccacgctcgacaagcgtgtggcaggtctgcagaag
gaaataatcagctacaaggaagagattgttctccggctgcgtgacatcaagctggaaaag
acgctcatcgaccgtattatcgagactgttgaagactacgtgcggcagatgcataactgc
cagcgtgacctttcagcgtatatactgtccaccggcaagacgcaggtggacatccagact
ctgttctccaagctggaagaacgcgaaataaatcctgtcgtcgctgcggacgaacttggc
ctgaccgtggaggagctgttttccttcaaggaaatgatcataggcaagatcgaaattctc
aagcgcctgcaggaaaagtgttgtcacaacgtgacggaccttgaagaagtgctgtggcgc
atcaagcgtggcaacagtgccgccatgcgtgccaagcaggagcttatccgttccaacctg
cgccttgttgtgagcatcgcaaagaagtacaccaaccgcgggttgcagttcctcgacctg
attcaggaagggaacatcggcctcatgaaggcggtggacaagttcgaataccagcgcggt
tacaagttctccacgtatgctacctggtggatacgtcaggccatcacccgcgccatcgcg
gatcaggcccgtaccatccgtatccctgtgcatatgatcgaaacgatcaacaagcttatc
cgcacttcccgctaccttgtgcaggaactgggacgcgaccccacgcccgaagaaattgcg
gagcgtatggactatcccatcgacaaggtgaagaaggtcctcaagatcgccaaggaaccc
atttctctcgaaactcccatcggggatgaggaagattccagcctcggcgatttcattgaa
gacaagaaggctgttgcgccgtccgaagaggtggtcaacaccaagcttggcgaacagatt
gccagcgtgcttgccgaccttaccccccgtgaggagcaggtgttgcgcaagcggttcggt
attggcgaaaagtccgaccacactctggaagaagtgggtaagctctttaacgttacccgc
gaacgtatccgccagatcgaagccaaggcgcttcgaaagttgcggcatcctgttcgaagc
cagaccctgcgttcgtactacgaaagctga
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