KEGG   Desulfovibrio subterraneus: LN040_03145
Entry
LN040_03145       CDS       T08953                                 
Name
(GenBank) HU family DNA-binding protein
  KO
K03530  DNA-binding protein HU-beta
Organism
dsb  Desulfovibrio subterraneus
Brite
KEGG Orthology (KO) [BR:dsb00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dsb03032]
    LN040_03145
   03036 Chromosome and associated proteins [BR:dsb03036]
    LN040_03145
   03400 DNA repair and recombination proteins [BR:dsb03400]
    LN040_03145
DNA replication proteins [BR:dsb03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    LN040_03145
Chromosome and associated proteins [BR:dsb03036]
 Prokaryotic type
  Nucleoid associated proteins
   HU (heat unstable protein)
    LN040_03145
DNA repair and recombination proteins [BR:dsb03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Supressor
      LN040_03145
SSDB
Motif
Pfam: Bac_DNA_binding HU-HIG HU-CCDC81_bac_2 HU-CCDC81_euk_2 RNA_polI_A14
Other DBs
NCBI-ProteinID: WBF68119
LinkDB
Position
complement(704240..704512)
AA seq 90 aa
MTKADLIEKIAEKANLTKANAERSLNAFIDAVEDVLVKEGKLTLTGFGTFVVEERKERKG
RNPRTGAEISIPAAKVVKFRPGKLLKEAIK
NT seq 273 nt   +upstreamnt  +downstreamnt
atgactaaagcggatctcatcgaaaagattgcagaaaaggcgaacctcaccaaggctaat
gccgagcgttcccttaacgccttcatcgacgctgttgaagacgttctggtcaaggaaggc
aagctcaccctgaccggtttcggcacttttgttgtcgaagagcgcaaggaacgtaaggga
cgcaacccccgtaccggcgcagaaatttccattcccgccgccaaggtggttaagttccgt
cccggcaagcttcttaaagaagctatcaagtag

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