KEGG   Desulfovibrio subterraneus: LN040_03510
Entry
LN040_03510       CDS       T08953                                 
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
  KO
K03702  excinuclease ABC subunit B
Organism
dsb  Desulfovibrio subterraneus
Pathway
dsb03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:dsb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    LN040_03510 (uvrB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dsb03400]
    LN040_03510 (uvrB)
DNA repair and recombination proteins [BR:dsb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     LN040_03510 (uvrB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      LN040_03510 (uvrB)
SSDB
Motif
Pfam: UvrB_inter UvrB_3rd UvrB Helicase_C ResIII UVR DEAD AAA_30 AAA_22 AAA_5 WI12 C6orf89_N
Other DBs
NCBI-ProteinID: WBF68184
LinkDB
Position
complement(784839..786863)
AA seq 674 aa
MQENMFKLVTSFTPQGDQPQAIAELTANLNAGIRDQVLLGATGTGKTFTVAQTIAATQRP
ALVLAPNKTLAAQLYNEFKELFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDNI
DKLRHAATHALLTRRDVIIIASVSCIYGLGSPEYYAKLVIPVETGQQISMDSLIGRLVDV
QYERNDYDFHRGTFRVRGDVLEIIPAYHHERALRLEFFGDEIESMSEIDPITGNVLGSVG
KTVIYPASHYVSDRDNLNRAVGDIRVELQQRLAEFRDTNRLVEAQRLEQRTMLDLEMVEE
MGYCTGIENYSRHLDNREEGSPPSCLLDYFPDDFVLYVDESHITVSQVGAMFKGDRSRKQ
TLVDFGFRLPSALDNRPLNFDEFLERIGQTVYVSATPGKWEMERAQGLVVEQIIRPTGLL
DPLVEVRPVKGQMDDLLGECKQRAARDERVLVTTLTKRMAEDLTEYFNSMGTVTRYLHSD
IDTMERMAILQALRRKEFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSMGSLIQTF
GRAARNVEGRVILYADVVTRSMRAAMEETARRRERQEAFNTENGITPATIRKKLESSFDS
LYSPGDSRKGKGRGKAGGPAMPAEDWGLSSEDIGKRIQQLERDMREAAKELEFEKAAELR
DRIQVLRQRLLAAD
NT seq 2025 nt   +upstreamnt  +downstreamnt
atgcaagagaacatgttcaagctcgttacgagctttaccccgcagggcgaccagcctcag
gccatagcggaactgaccgccaacctgaatgcgggtatccgcgatcaggtgctgcttggt
gccacaggcaccggcaaaaccttcaccgtggcgcagaccattgccgcaacacaacgcccc
gcattggtgcttgcacccaacaaaacccttgccgcgcagctctacaacgaattcaaagaa
cttttcccgcataatgcggttgaatatttcgtcagctactacgattactatcagccggaa
gcttatgttccttcctccgacacctacatcgagaaggactcttccatcaacgataacata
gacaagctgcgtcatgccgccacgcatgcgctgctgacgcggcgcgatgtcatcatcatc
gcttcggtttcgtgcatttacggcctcggttcgccggaatactacgccaagctggtcatt
cccgtggagacagggcagcagataagcatggattccctgatcggtcgtcttgtggatgtg
cagtacgagcgcaacgactacgactttcaccgtggcaccttccgtgtgcgcggggacgtg
ctcgaaatcattcccgcctatcaccatgaacgcgctctgcggctggaatttttcggcgac
gagatcgaatccatgagtgagatagaccccatcaccggcaacgtgctcgggtcggtgggc
aaaacggtcatctatcctgccagccactatgtctcggaccgcgacaacctgaaccgcgcc
gtgggtgacattcgtgtggagctgcagcaacggctggcggagttccgcgataccaatcgt
ctggtggaagcccagcgccttgagcagcgcaccatgctcgatctcgaaatggtcgaggaa
atgggctactgcacgggcatagaaaactactcgcggcatctggataaccgcgaggagggc
tctccgccttcctgtctgctcgactatttccccgacgactttgtgctctatgtggacgaa
agccacataaccgtgtcgcaggtcggggccatgttcaagggcgaccgttcccgaaagcag
acgctggtggatttcggcttccgcctgccttccgcgctggataaccggccgctgaacttt
gacgaatttctcgagcgcatcggccagaccgtctatgtttccgcaacgccgggcaaatgg
gagatggaacgtgctcaggggctggtggtggagcagatcatccgtcccaccggtcttctt
gatccgctggtggaagtgcgtccggtcaagggacagatggacgacctgctcggcgagtgc
aagcagcgggctgcccgcgatgagcgcgtgcttgtgaccaccctgaccaagcgcatggcc
gaagacctgacagaatacttcaatagcatgggcaccgtgacccgttacctgcattccgac
atagacaccatggagcgcatggccattctgcaggcgctgcgtcgcaaggaatttgatgtg
ctcatcggcataaatcttctgcgcgaagggcttgatataccggaagtttctctggtagct
attcttgatgccgacaaggaaggctttctgcgttccatggggtctctcattcagaccttc
ggacgagccgcacgaaacgttgaaggccgcgttattctgtatgcggatgtcgtaacccgc
tccatgcgggctgccatggaagaaaccgcgcgccgccgggaacggcaggaagcgtttaat
accgagaacggcattacgcccgccaccatccgcaagaagctggaaagctctttcgactca
ctctattctccgggtgattccagaaaggggaagggcagaggcaaggcgggcggacccgca
atgccggcagaggattggggactttcatcggaagacattggcaagcgcattcagcagctt
gaacgcgacatgcgcgaggcggccaaggaactggaattcgaaaaggctgcggaactgcgc
gaccgcattcaggtgctgcgccagcgattgctggctgcggactaa

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