Desulfovibrio subterraneus: LN040_04475
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Entry
LN040_04475 CDS
T08953
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
dsb
Desulfovibrio subterraneus
Pathway
dsb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dsb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LN040_04475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dsb03021
]
LN040_04475
03400 DNA repair and recombination proteins [BR:
dsb03400
]
LN040_04475
Enzymes [BR:
dsb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LN040_04475
Transcription machinery [BR:
dsb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LN040_04475
DNA repair and recombination proteins [BR:
dsb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LN040_04475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RAD51D_N
Motif
Other DBs
NCBI-ProteinID:
WBF68364
LinkDB
All DBs
Position
complement(973478..974521)
Genome browser
AA seq
347 aa
AA seq
DB search
MLIKQGDRTINTRNWSELVKPETITRSGDADTQYGKFVCEPLERGYGNTIGNALRRVLLA
SLQGAAIVAVKISGVQHEFTTIEGVLEDVTDVILNLKQIRFGMDTEEPQKIAFTVNQKGP
VTAAAIPGNQHVMVLNPDLHLFTLTEDKELTFELEVRMGKGYVPADMHEGLGDEIGLIAL
DASFAPVRKVAYAVEQARVGQMTNYDKLILQVWTDGSISPEDAIAYSAKIIKDQISVFIN
FDERISEEESSSSSADSGVNENLFKGIDELELSVRATNCLKSANITLVGELVQRSESEML
KTKNFGRKSLDEIRRVLCEMDLDFGMQVDGFEKKYQDWLKRKQQNEA
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atgctcatcaaacaaggcgacaggacgatcaatacgcgaaactggtctgaactggttaaa
cctgaaaccatcacccgttccggtgatgccgatacccagtacggcaagttcgtttgcgaa
ccgctggaacgcggatacggcaacaccatcggtaatgctcttcgtcgtgtactgctcgca
tcgcttcagggcgcagctattgtcgctgtgaagatctccggtgtacagcacgagttcacc
accattgagggtgttctggaagacgtgaccgatgtgattctgaacttgaagcagatcaga
ttcggcatggatacggaagagcctcagaagattgcgttcaccgtgaatcagaagggcccc
gttactgctgctgccattcccggcaaccagcacgtgatggtgctcaaccctgatctgcac
ctctttaccctcaccgaggacaaggaacttaccttcgaactcgaagtgagaatgggtaag
ggatatgtgccggctgacatgcacgaaggactcggtgacgagatcgggcttatcgctctc
gatgccagcttcgcgcctgtacgcaaggttgcctacgccgttgagcaggctcgcgttggt
cagatgacgaactatgacaagctcatccttcaggtgtggaccgacggttctatttcccct
gaagatgccatcgcgtacagcgcgaagatcattaaggatcagatctctgtgttcatcaac
ttcgatgaacgcatctctgaagaagagtccagctcttcttctgcagacagcggtgtgaat
gaaaatctcttcaagggtattgatgagctcgaactttcagttcgtgctaccaactgcctg
aagagcgcaaacatcactcttgttggcgagctggttcagcgatctgaatctgaaatgctg
aagaccaagaactttggtcgcaagtcccttgacgaaattcgtcgagtgctttgcgaaatg
gatctggacttcgggatgcaggtcgatggctttgagaagaaataccaggattggttgaag
aggaagcagcaaaatgaggcatag
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