Desulfovibrio subterraneus: LN040_09045
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Entry
LN040_09045 CDS
T08953
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dsb
Desulfovibrio subterraneus
Pathway
dsb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dsb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LN040_09045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dsb03019
]
LN040_09045
03009 Ribosome biogenesis [BR:
dsb03009
]
LN040_09045
Enzymes [BR:
dsb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LN040_09045
Messenger RNA biogenesis [BR:
dsb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LN040_09045
Ribosome biogenesis [BR:
dsb03009
]
Prokaryotic type
rRNA helicases
LN040_09045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
WBF69215
LinkDB
All DBs
Position
complement(1990942..1992540)
Genome browser
AA seq
532 aa
AA seq
DB search
MEGFSFEGVELSQEVLKSIEDMGFEEASPIQALAIPPILQGKDIIGQAQTGTGKTAAFGI
PILERINPRDRDVQAIVLCPTRELAIQVSEEISNLAKRMRSVSVLPVYGGQPIDRQFKAL
KRGAQVLVGTPGRVMDHLERGTITLDKVVMAVLDEADEMLDMGFRDDIEFILEKAPETVQ
TVFFSATMPPEILQLAKRFLKEPEFLKVTQKVLTVPSIEQIYYEVRPFQKMDALCRVLDV
YNPKLTVVFCSTKRGVDELTANLQARGYQADGLHGNLNQTQRDRVMNRFRKGGIEILVAT
DVAARGIDVENVEAVVNFDIPNDVEYYVHRIGRTGRAGRTGRAFTFVSPKEFWKLRDIKR
YTKARIVQHQIPSIEEVETAKSGQLLGEIRSQIQTGNLERYISTVENFIESEFNGDLTTM
EMAAALLRIMMKRDLGDAVPDETGGFGDTGAQVGMVRLFVNVGRKMRIGARDIVGAIAGE
TGLPGKMIGNIDIYDRFTFVEVPQDYAQEVLGVMNGNQIRGYRLFVEPASRK
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atggaaggcttttcgtttgaaggggtggaactgtcgcaggaagtgctcaagtccatcgag
gacatgggttttgaagaagcatcacccatccaggctcttgctatcccgcccattctgcag
ggcaaggacataatcgggcaggctcagaccggcaccggcaaaaccgctgcgttcggcatt
cccattctcgaacgcatcaacccgcgtgatcgcgacgtgcaggccattgtgctgtgtccc
acccgcgagcttgccattcaggtatccgaagaaatttcaaacctcgccaagcgcatgcgc
agcgtgagcgtgctgcccgtttacggcggccagcccatcgaccgccagttcaaggcgctc
aagcgcggcgcacaggttctggtaggcacgcccggccgtgttatggaccacctggagcgg
ggtaccatcaccttggataaggtggtcatggccgtgctggacgaagcggacgaaatgctc
gacatgggcttccgcgacgacatcgagttcatcctcgaaaaagcgcccgagacggttcag
accgtattcttctccgccaccatgccgccggaaattctgcagctggcaaagcgcttcctc
aaggagcccgaattcctcaaggtgacccagaaggtgctcaccgtgcccagcattgagcag
atttactatgaggtgcgtcccttccagaagatggatgccctgtgtcgcgtgctggacgtg
tacaaccccaagctgaccgtggtgttctgttccaccaagcgtggtgttgacgagctgacg
gccaacctgcaggcgcgcggttatcaggccgacgggctgcacggcaacctgaaccagacc
cagcgtgaccgcgtgatgaaccggttccgtaagggcggtattgaaatccttgttgccacg
gacgtggcggcacgcggtatcgacgtggaaaacgttgaagccgtggtgaacttcgatatt
cccaacgacgtggaatactacgtgcaccgtatcggccgtaccggccgtgcaggccgcacc
ggtcgcgccttcaccttcgtttctcccaaggaattctggaagctgcgtgacatcaagcgc
tacaccaaggcgcgcattgtccagcatcagattccctccattgaggaagtggaaaccgcc
aagtccggccagctgctcggagaaatccgctcgcagattcagaccggcaaccttgagcgc
tacatctccaccgtggagaacttcatcgagagcgaatttaacggcgacctcaccaccatg
gaaatggccgcagccctgctgcgtatcatgatgaagcgcgacctcggcgacgccgtgccg
gacgaaaccggcggattcggcgacaccggcgcacaggtgggcatggtccgcctgttcgtg
aacgtgggccgcaagatgcgtattggcgcacgtgacattgtcggtgccattgccggcgaa
accggcctgcccggcaagatgatcggcaacatcgacatctacgaccgcttcacctttgtg
gaagtgccgcaggattatgcacaggaagtgcttggtgtcatgaacggcaaccagattcgc
ggctaccgcctctttgtggagcccgccagccgcaagtaa
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