Desulfovibrio subterraneus: LN040_09985
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Entry
LN040_09985 CDS
T08953
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
dsb
Desulfovibrio subterraneus
Pathway
dsb03420
Nucleotide excision repair
dsb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dsb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LN040_09985
03430 Mismatch repair
LN040_09985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dsb03400
]
LN040_09985
Enzymes [BR:
dsb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LN040_09985
DNA repair and recombination proteins [BR:
dsb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LN040_09985
MMR (mismatch excision repair)
Other MMR factors
LN040_09985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
HHH_5
AAA_12
HHH
DEAD
Motif
Other DBs
NCBI-ProteinID:
WBF66061
LinkDB
All DBs
Position
2222987..2225149
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AA seq
720 aa
AA seq
DB search
MIDYKKELNPAQYEAAMTLEGPLLCIAGAGSGKTRTVVYRLANMVEQGVAAHDILLLTFT
RKASQEMLHRAGELLGHGIGAVSGGTFHGFAYSVLRQHPPQGFEGGLSIMDSADATEALK
YCKDTMGLGKGDKSFPKTATVMGMLSKARNKEREIGDILQREAFHLAAYRDDIVQISTGY
SNYKREHGLLDYDDLLFELENLLRTRPDLLDYYRHRFKYIMVDEYQDTNLVQARLVQLLA
GGHRNVMAVGDDAQSIYAFRGANVQNILEFPAMFPGTRIVKLEENYRSVQPVLDLTNAIL
AEAPVAFHKTLFTSRTGGNLPQLVKPLSDLTQANQVVNKIAELRRSYEPKDIAVLFRAGY
QSYHVEMQLSKAGIPFRKYGGVKYSDAAHVKDVMCYVRLLINPLDLPAFQRLAANVKGVG
PKTALKIYEASRLADPSTLDRLLKKYPDFAKDLELVDSLRRQRLEPVEVLEEVLEVYKPR
LMQLYPDDYPRREHGLEQLVQIAATYRELDLFVSDLSLEDPNPDAAASEDHITLSTVHSA
KGLEWDAVLVIDLVEERFPSKQALQKADDLEEERRLMYVACTRAREYLGLFVPSSIYSRG
GGGNEPAMPSPFVRDLPVYLYEEWKENYTGGLMQREYQQQRTMRLGDSVPAAPDAFSRAT
GGESEPAFAPRTASRKLGHCTHKIFGRGKLIKHLPPDKYQVNFPGFGLKVIMEAYLQMEE
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgatcgattacaagaaagaactgaaccccgcccagtacgaggcggccatgacgctggaa
ggccccctgctgtgcattgcaggcgcaggctccggcaagacgcgcacggtggtataccgc
ctcgccaacatggttgagcagggcgttgccgcacacgatattctgctgctcaccttcacc
cgcaaggcttcgcaggaaatgctgcaccgtgcgggcgaactgctcggccacggcataggc
gcggtttccggcggcacctttcacggttttgcctactccgtgctccgccagcaccctccg
cagggattcgagggcggcctttccatcatggattccgcagacgccaccgaagccctcaaa
tactgcaaggacacgatggggctgggcaagggcgacaagtcctttcccaaaaccgccacg
gtcatgggcatgctctccaaggcccgcaacaaggaacgcgagataggcgacattctgcag
cgcgaggcattccaccttgccgcctaccgcgacgacattgtccagatatccaccggctac
agcaactacaagcgcgagcacggcctgctggactacgacgacctgctctttgagctggaa
aacctgctgcgtacgcgccccgacctgctggactattaccgccaccgcttcaaatacatc
atggtggacgagtatcaggacaccaacctcgtgcaggcgcgcctcgtgcagctgctggca
ggcggccaccgcaacgtcatggccgtgggcgacgatgcccagtccatctacgccttccgc
ggtgccaacgtgcagaatattctggaatttccggccatgttcccgggtacccgcatcgtg
aagctggaagagaactaccgctccgtgcagcccgtgctggacctgaccaacgccattctt
gccgaagcgcccgtggcctttcacaaaacgcttttcaccagccgcacgggcggcaacctg
ccccagcttgtaaaacccctttcggacctcacgcaggccaatcaggtggtgaacaagata
gcggaactgcgccgcagctacgagcccaaggacattgccgtgctcttccgcgcgggctac
cagtcctaccatgtggaaatgcagctctcaaaggcaggcattcccttcagaaagtacggc
ggcgtgaagtattcggacgcagcgcacgtgaaggacgtgatgtgctatgtgcgcctgctc
atcaacccgctcgacctgcccgccttccagcgccttgccgccaacgtgaaaggagtgggt
cccaagacagccctgaagatttacgaggcatcgcgccttgccgatccttccacgctggac
aggctgctgaaaaagtatcccgactttgccaaggaccttgaactggtggattcgctgcgc
agacagcgccttgagccggtggaagtgctggaagaggtgctggaggtctacaaacccaga
ctgatgcagctgtatccggacgactatccccgccgcgagcacgggcttgaacagctggtg
cagatcgcggccacctaccgcgaactggaccttttcgtctccgacctttcgctggaagac
cccaatcccgacgcagcagcatcggaggaccatatcacgctttccaccgtgcattctgcc
aaggggctggagtgggacgccgtactggtcattgatctggtggaagaacgcttcccatcc
aagcaagcgctgcagaaggcagacgatctggaagaagaacgcaggctcatgtatgttgcc
tgcacccgtgcgcgggaatatctgggcctgttcgtgccatcatccatatacagccgcggg
ggcggcggcaacgagccggccatgcccagtccctttgtgcgcgacctgcccgtctatctg
tatgaagagtggaaggagaactacaccggcggcctgatgcagcgcgagtatcagcaacag
cgcaccatgcgccttggtgacagcgtacccgccgcgccggatgccttttcccgcgccacc
ggcggcgaaagcgaaccggcctttgcgccgcgcaccgccagccgtaaactgggccactgc
acgcacaagatttttggccgcggcaaacttatcaagcatttgcctccggacaaatatcag
gtaaatttccccggattcggactcaaggtgatcatggaagcctacctccagatggaggag
tag
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